Wsmi002530.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:27886434-27887746[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.2 2.3e+03 0.4 0.3 20 29 95 104 90 115 0.75 2 10 0.21 2.2e+02 3.7 0.3 14 28 152 166 141 174 0.83 3 10 0.016 17 7.2 1.7 9 38 179 199 173 208 0.71 4 10 1.5 1.6e+03 0.9 2.5 4 27 201 223 198 234 0.79 5 10 0.0019 1.9 10.3 1.0 16 41 242 264 223 266 0.86 6 10 0.00065 0.68 11.7 3.3 6 41 261 291 260 294 0.84 7 10 0.05 52 5.7 3.3 15 43 298 328 291 329 0.83 8 10 0.0015 1.6 10.6 5.1 2 38 314 346 313 351 0.87 9 10 0.1 1.1e+02 4.7 1.2 13 41 354 379 347 381 0.77 10 10 0.011 12 7.7 1.3 4 29 374 398 372 402 0.81
Sequence Information
- Coding Sequence
- ATGCAGGAAGAATTCGGAACGATAAAAGTGGAAGAGATTACGATATTCGACACTCTGTCAAATGTTATAGAATCTGATCTACCGATGATCGAGGAGGAAACGGGACGACAAAATGGAACAAGTGTAATAGAAGATAAATCAGCAATTGACAATAATTTTCATAAAACCGGTAGAACAAAAACTATTGCAGCAGCTGATAGTGAAATTCCCGCTTCTGGCTCACGCGAAACGAATGAATTGGAACCGAGCCCTACTGATGGCAGCCAATGGAAACACATTTACAATATTTGTGGAAAGGAGTACGAAACAAAGCGAGTTCTCCATCGGCACAAGAAAACACATAATGGCGAACAATCGTTTATTTCTGACGAAAGTAGCGACACGTTGAGCACAGCCCGCAAGCTTAATAACCATAATACGCATCATACAGAGGAAAATAAATACAAGTCGAGTGAGCGACGGTACAGATGCGACATCTGCGGCAGAGATTACAAGTCAGTATATAAGCTTAATGAGCACACAAAGTATCACACATCCGTCGAGGATGATTCGCACATATGCAACCTTTGCGGGAAAGTTTTTGTTAGTCGCTCTCACCTGTTACAACATAAGCACATTCACAGTGAGGGACTACGACACAAATGCGACATCTGCGAAAAAGATTTCAAACTACTACGTTATCTGAATAATCACAGGAAGTGTCACACAATCCATGAGGATGATTTATACAAATGTCCCATTTGCGGGAAAGGTTTCGTGCGTCACAGCACACTTTCAAAACATTTGAACACCCACAGTGACGAGCGGTACAGATGCGGCGTCTGTGGCAAGGAATACCAGTCGGCAAAGAATCTGAAGTATCACATGACACATCACAAATCCGAAAAGGATGAACTGCACAGTTGCGACGTTTGTGGGAAAGCTTACGTTTATCGCTCTGCCCTCTTACAACATATGCACACTCACAGTGACGAGCGAAAACACAGATGCGATATCTGCGGCAAGGATTACAAAACAGCAACTAATCTGAAAACTCACAAAAAGCATCACACATCCGATGACGATTCACTGCACAAATGTACCATTTGCGGAAAAGGCTTCGTGCTTCGCTACGGGCTCAAAAAACATTTGGAAACGCATAGTGACGAACTACTGTACAAGTGTAAGATCTGCGACAAGCAGTACAGAAGCAGAGGAGGACTGTACCTGCACAAAAAGGCACATCAAGATGAGCAATCGTGA
- Protein Sequence
- MQEEFGTIKVEEITIFDTLSNVIESDLPMIEEETGRQNGTSVIEDKSAIDNNFHKTGRTKTIAAADSEIPASGSRETNELEPSPTDGSQWKHIYNICGKEYETKRVLHRHKKTHNGEQSFISDESSDTLSTARKLNNHNTHHTEENKYKSSERRYRCDICGRDYKSVYKLNEHTKYHTSVEDDSHICNLCGKVFVSRSHLLQHKHIHSEGLRHKCDICEKDFKLLRYLNNHRKCHTIHEDDLYKCPICGKGFVRHSTLSKHLNTHSDERYRCGVCGKEYQSAKNLKYHMTHHKSEKDELHSCDVCGKAYVYRSALLQHMHTHSDERKHRCDICGKDYKTATNLKTHKKHHTSDDDSLHKCTICGKGFVLRYGLKKHLETHSDELLYKCKICDKQYRSRGGLYLHKKAHQDEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01525199;
- 90% Identity
- iTF_01525199;
- 80% Identity
- iTF_01525199;