Wsmi002522.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:27865464-27866794[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0077 8.1 8.3 1.3 16 29 91 104 83 115 0.73 2 10 0.18 1.9e+02 3.9 4.5 9 27 141 158 134 176 0.75 3 10 0.09 93 4.9 2.1 8 38 168 194 162 194 0.77 4 10 0.0017 1.7 10.4 0.5 1 28 189 215 189 224 0.89 5 10 0.043 45 5.9 0.5 8 26 227 243 221 252 0.80 6 10 0.063 65 5.4 0.7 6 27 252 272 247 273 0.78 7 10 0.0049 5.1 8.9 0.5 11 41 288 313 282 315 0.80 8 10 0.26 2.7e+02 3.4 3.3 16 42 318 345 312 345 0.75 9 10 0.049 51 5.7 3.0 11 41 343 370 336 371 0.81 10 10 0.00054 0.57 12.0 0.9 4 31 365 391 363 394 0.83
Sequence Information
- Coding Sequence
- atggagGAAGAATCCGGAACGATAAAAGTGGAAGAGATTACGATATTCGACACTCTGTTGGATGTTATAGAAGCTGATCTATCGATCACCAAGGAGGAAACGGCACCAATATATGGGTCAAGCGTAATAATAGATAAATCAGCAATTGACAATACTATTCATAAATCCGGCAAAAAGAAAACTACTGTAGCAGCTGATGGTGAAATTGCCACTTCTAGCCCAAGCGTAACGCATGAATTGGAACCGAGTCCTACTGATGGCAGCCAACGGAAACACATTTGCAACATTTGTGGTAAGGAGTTAAAAACAAAGCCAATTCTCTGTCAGCACATGAAAACACATAATGACGAACAATCGTTTATATTTGACGAAAGCAGCGAAACGTTAAGCACATCCCGCAAGTTTAATAACCATAATAGGCATCatacagagaaaaataaatacaagTGCGATATATGTGAGAAAACTTTCCTCTTGAAAACACAAATCAGAATTCACATGAGGCAACACACGAAGAATCGCGCCCATAAATGTCTCATTTGCGGAAAGGGGTTTATCTACAAATCGCAACTCAAAAGGCATACGCTGTTCCACAGTGACGAGCGCCGGTACAGATGCGACATCTGCGGCAAGGATTACAAATCAGTATATAAGCTTAATGAGCATACAAAGTATCACACATCCGTCGAGGATGATTCGCACAGATGCAACCTTTGCGGGAAAGTCTTCGGTTGTCGCTCTTACCTTTTAAGACATAGGCACACTCACAGTGAGGAACAACGACACAAATGCGACATCTGCGGAAAAGATTTCAAATTACTACTTTATCTGAATATGCACAGAAAGTATCACACAATCCTTGAGAATGATTTGCACAAATGTCCCTTTTGCGGGAAAGGTTTCGTGTATCACAGCACACTTTCAGAACATTTGAACACCCACAGTGACGTGCGTTGCAGATGCGATATCTGCGGCAAAGATTACCAGACAGCGAGGAGTCTGAACTATCACATGAAGAATCACATAACCAGAAAGGATGAACAGCACAAATGCACCATTTGTGGGAAAGGCTTCGTGCGTCGCTACGCGCTCAAACAGCATCTGGAAACGCATAGTGACGAACTACGGTACAAGTGTGAAATCTGCGGCAAGCAGTACAAAAGCAGAGGAGGACTCCATCCGCACAAAAAAGCACATGACGGCAAACAATCGGGACGAATTCAGCCAAACGTTCAAAGTTTTTGCTTCCCGGATAAATGA
- Protein Sequence
- MEEESGTIKVEEITIFDTLLDVIEADLSITKEETAPIYGSSVIIDKSAIDNTIHKSGKKKTTVAADGEIATSSPSVTHELEPSPTDGSQRKHICNICGKELKTKPILCQHMKTHNDEQSFIFDESSETLSTSRKFNNHNRHHTEKNKYKCDICEKTFLLKTQIRIHMRQHTKNRAHKCLICGKGFIYKSQLKRHTLFHSDERRYRCDICGKDYKSVYKLNEHTKYHTSVEDDSHRCNLCGKVFGCRSYLLRHRHTHSEEQRHKCDICGKDFKLLLYLNMHRKYHTILENDLHKCPFCGKGFVYHSTLSEHLNTHSDVRCRCDICGKDYQTARSLNYHMKNHITRKDEQHKCTICGKGFVRRYALKQHLETHSDELRYKCEICGKQYKSRGGLHPHKKAHDGKQSGRIQPNVQSFCFPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01525228;
- 90% Identity
- iTF_01525228;
- 80% Identity
- iTF_01525228;