Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056646.1:69045648-69065581[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0041 4.2 9.2 0.7 15 30 11 28 5 35 0.78

2 16 0.003 3.2 9.6 1.2 13 40 37 61 31 63 0.81

3 16 0.0043 4.5 9.1 3.1 13 33 65 86 58 92 0.76

4 16 0.0019 2 10.2 2.6 6 33 87 114 86 120 0.77

5 16 0.078 81 5.1 2.2 14 36 122 141 114 146 0.71

6 16 0.0014 1.5 10.6 3.1 3 33 140 170 138 176 0.83

7 16 0.06 62 5.4 3.8 14 35 178 200 170 204 0.73

8 16 0.0059 6.2 8.6 4.8 13 38 205 231 198 232 0.81

9 16 0.0026 2.7 9.8 1.5 16 33 236 254 230 260 0.78

10 16 0.0046 4.8 9.0 2.7 6 33 255 282 254 289 0.77

11 16 0.045 47 5.8 2.8 14 33 290 310 282 316 0.75

12 16 0.0011 1.2 11.0 3.2 6 35 311 340 310 344 0.76

13 16 0.076 79 5.1 3.9 17 37 349 366 338 371 0.73

14 16 0.0084 8.7 8.2 6.0 4 38 365 399 362 400 0.79

15 16 0.031 33 6.3 6.1 19 43 407 428 402 429 0.93

16 16 1.7 1.7e+03 0.8 6.4 13 44 490 518 480 518 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0041	4.2	9.2	0.7	15	30	11	28	5	35	0.78
2	16	0.003	3.2	9.6	1.2	13	40	37	61	31	63	0.81
3	16	0.0043	4.5	9.1	3.1	13	33	65	86	58	92	0.76
4	16	0.0019	2	10.2	2.6	6	33	87	114	86	120	0.77
5	16	0.078	81	5.1	2.2	14	36	122	141	114	146	0.71
6	16	0.0014	1.5	10.6	3.1	3	33	140	170	138	176	0.83
7	16	0.06	62	5.4	3.8	14	35	178	200	170	204	0.73
8	16	0.0059	6.2	8.6	4.8	13	38	205	231	198	232	0.81
9	16	0.0026	2.7	9.8	1.5	16	33	236	254	230	260	0.78
10	16	0.0046	4.8	9.0	2.7	6	33	255	282	254	289	0.77
11	16	0.045	47	5.8	2.8	14	33	290	310	282	316	0.75
12	16	0.0011	1.2	11.0	3.2	6	35	311	340	310	344	0.76
13	16	0.076	79	5.1	3.9	17	37	349	366	338	371	0.73
14	16	0.0084	8.7	8.2	6.0	4	38	365	399	362	400	0.79
15	16	0.031	33	6.3	6.1	19	43	407	428	402	429	0.93
16	16	1.7	1.7e+03	0.8	6.4	13	44	490	518	480	518	0.84

Sequence Information

Coding Sequence: ATGTCAGGTGAGCGATTGCACACTGGAGAGACTCCCTATCAGTGCACATATTGCGAGAAGAAATTCAGTAGAAGAGAGCGTTTAACGATTCACACAAGAATACATACCGGAGAGACCCCTTATAGATGCACATATTGTGATAAGAAATTTACCAGAAAAGAGCGTTTAACGTATCACATAAGATTACATACCGGAGAGACCCCCTATCAGTGTACCTATTGCGAGAAAAAATTCACGCGAAAAGAACATTTaacaaatcatgtcagATTGCACACCGGAGAAACACCCTATCAGTGCACTTATTGCGAGAAGAAATTCACTCGAAAAGAACACTTAACAAATCACACAAGATTGCACACTGGCGAGACTCCCTATCATTGCACATATTGCGAGAAGAAATTTATGCGAAAAGAACACTTGAAAAACCATGTCAGATTGCATACCGGAGAAACTCCCTATCAATGTACGTACTGCCAGAAGAAGTTTACGCGAAAAGAGCATTTAACGAATCACACCAGATTACACACCGGCGAAACTCCCTACCATTGCACTTACTGTTCGAAGAAGTTCGCTCGTAAAGAACATCTCACAAATCATATCAGATTACACACTGGCGAGACTCCTTACCAATGCACGTACTGTTCGAAGAAGTTCACTCGAAAAGAACATCTCACAAATCATCTCAGGTTGCACACCGGCGAAACTCCTTACCAGTGTAACTTTTGCCAAAAGAAGTTTACGAGAAAAGAACACCTAACGAACCATGTCAGATTACACACGGGCGAGACTCCTTATCAGTGCTCGTATTGCCAGAAGAAGTTTACGAGAAAAGAGCACTTGACCAATCACACCAGATTGCACACCGGAGAGACTCCTTATCATTGCACCTATTGCGAGAAGAAATTTATGAGAAAAGAGCATTTAACGAACCATGTCAGATTGCACACCGGAGAAACTCCATATCAGTGCACATATTGCGGGAAGAAATTCACCCGAAAAGAGCATTTAACCAATCACATCAGATTGCATACCGGAGAGTCTCCTTATCGGTGTGAGTACTGTAACAAGTCATTCACCAGAAAAGAACACCTCAAGAATCACGTCAGGCTTCACACCGGTGATTCGCCGCACAAATGCGAGTACTGCAACAAAACGTTTACGCGCAAGGAGCATCTCAACAATCACATGCGCCAGCACAGCGGAGATAATCCTCATTGCTGCAATGTGTGCAACAAGACCTTCACCCGCAAGGAGCATCTGATCAATCATATGAGTCGGTCACACACCGGCGAACGTCCGTTCCAGTGCGATGAATGCGGAAAGTCGTTCCCACTGAAGGGCAATCTGTTGTTCCACGCGCGCAGCCACACCAAGGGGCAGCCGATGGAGCGGCCGTTCCGTTGTGATATGTGCCCGAAAGACTTCATCTGCAAGGGACACTTGGTGTCCCACCAGCGATCTCATACCGGGGAGAAAAATCATCACTGCCCGCAGTGCAGCAAGTCGTACGTTGAGCGTGGCAACATGCTGCGGCATATGAAGAAAACGCACCCGGACGCGGTTATACCTGTGCTGCCCAAGCTGCCGCACATCAAGGTGGAACCGAAGTCCACCGTATCTCAGCCAACGTCGGTGGTGACGTCCCCGGCTCAGGCCACCTCCACAATCACATCGATCATCTCCAATACTCATCCATCGCAGCATCATCACATTCAACCGAAAATGGAACAGAAATCTCAGATACATCATCTTCCGATTCCCCATCAGCATCAGGCTCACCAGCTGCACCACCACATCTCGGCCCCGATGCATCTGCCCCCACCAAACCCCCAACAATTGGCAGCACTCGCCCTCCATCATCAAGTGgcccaacagcagcagcagcaacaacaatcCTCACCCTCAACGGGCCGAGCACAGCCTTCTCCTCGTACATCACTTCCGCCGCcgccgcagcagcagcagcatccggTGCAACAGCCGGGACCGCCCCAGGTCCCCCCGGGCCCCCCGGAAAACCAACAACAGCCGCAGCAGCAGCCGGTCCCGGGCCCAACTGGACCCCTGCCACCACAACACCATACGGTCCCGGTTACTATTATAACCCACGCTGGCACAATTAATCCGATGCCAGATGGACTCAACAATCGGGTCGGTACGATCCAGATGCACCACCTGAATGCGGCTCAGTCGGAGGAGCACTCGGTGGTTTACTGA
Protein Sequence: MSGERLHTGETPYQCTYCEKKFSRRERLTIHTRIHTGETPYRCTYCDKKFTRKERLTYHIRLHTGETPYQCTYCEKKFTRKEHLTNHVRLHTGETPYQCTYCEKKFTRKEHLTNHTRLHTGETPYHCTYCEKKFMRKEHLKNHVRLHTGETPYQCTYCQKKFTRKEHLTNHTRLHTGETPYHCTYCSKKFARKEHLTNHIRLHTGETPYQCTYCSKKFTRKEHLTNHLRLHTGETPYQCNFCQKKFTRKEHLTNHVRLHTGETPYQCSYCQKKFTRKEHLTNHTRLHTGETPYHCTYCEKKFMRKEHLTNHVRLHTGETPYQCTYCGKKFTRKEHLTNHIRLHTGESPYRCEYCNKSFTRKEHLKNHVRLHTGDSPHKCEYCNKTFTRKEHLNNHMRQHSGDNPHCCNVCNKTFTRKEHLINHMSRSHTGERPFQCDECGKSFPLKGNLLFHARSHTKGQPMERPFRCDMCPKDFICKGHLVSHQRSHTGEKNHHCPQCSKSYVERGNMLRHMKKTHPDAVIPVLPKLPHIKVEPKSTVSQPTSVVTSPAQATSTITSIISNTHPSQHHHIQPKMEQKSQIHHLPIPHQHQAHQLHHHISAPMHLPPPNPQQLAALALHHQVAQQQQQQQQSSPSTGRAQPSPRTSLPPPPQQQQHPVQQPGPPQVPPGPPENQQQPQQQPVPGPTGPLPPQHHTVPVTIITHAGTINPMPDGLNNRVGTIQMHHLNAAQSEEHSVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00092936;
90% Identity: iTF_00948957;
80% Identity: iTF_01525069;