Wsmi008766.2
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- Tf2-12
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:103251362-103259406[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-07 8.1e-05 24.0 0.0 15 43 25 52 11 53 0.79 2 2 4 1.6e+03 0.7 0.0 2 13 866 877 865 882 0.89
Sequence Information
- Coding Sequence
- ATGAGTAACGCGGCAGTGAAACGTGGTGAACGGGAGCAGGCCATCAAGTTGGCGATGATTGCCATTAAGTTTGGCAAGTCGTTGCGGGCAGCTGCTGGAGAGTATGGCATACCCCGTACCACCTTGCTTCGCCACAAGCGGTTAAATGCTGGCCTGATGGTGCAAGCAGACCCGCTACATCCTACGATATCGATGGaggatgtgcaaatttgtaagCGCGGAAGACCACCGGTGCTCCCCGAGGAACCAGAACGGGCATTCGGCTATGCTCGGACAAGTTCTTCGCTGGGGATTCCAGTTCCCGAGAATTGGATTGCGAACGCAAAGGCAGGCCCTGTTTGGTTTCGGAACTTTCTGCGCCGAAGGCCGAACCTGTCGATGCGTTCACCCGAGTCGACCAGCATAGCCAGAGTTTCTGCTTTTTATCCCACAAATGTGGACAAGTTTTTCGATCTTATACGCACAGTAGCCGAGAATATAACGTTCGAACCAAATTCCACCTGGAAACTGGACGAGACTGGAGTGACAATAGTTCAGAAACCTCAACAAGTTGTCAGTCGCCGTGGAGTTAAACGTGTTGGTCGGGTAACTTCGGCCGATCGGAGCCCATTGGTTACGATGCTACTTGCGGATAATTTTGCTTCCAAATCGCCGtctgaaaacacgaagaaaaaGCCAGGTGTTCAGACGGAAAAGAATTTTGTTGAGGGAAATTCGAAACCGGAATCCAAACAAAAGGCGGTGATTTGTCTCGACTATCTGGTGGAACAGCATCGACCTCCTAGTCTCGGAGTCTGTTACAACTGCGGTGGATTTCGATGTCTCTCGCTGTCCCTACTGCTTAAAAAACGGGATTTGTACCAACTAAAGTCGCAGTTGTGTAAGGATGTGTACCCCATAGAAAGCCTTAAATTAGACCCCCAAATTTACAACAGTTTTCGACCAGCTCATGATGAGGATTATCGTGATCCGTTGTTTGTTGAAACCATCATCCTCGATGATCCGTCCGATGATCGTCCTTTCGCTTTGGTCGCAGTATATGGCCATTCCTTCAAGGCTTTGCTCGACAGTGGTAGTAATGCCACCATTATCACCAAAAAGTTGTACCGAAAGTTTTCCAAAAGTCCATTGAAAGGTTTGGAAAGGCCAGTTGAACTTCGTTCAGCAAATGGACAGACCTTACCGATCCTTGGACAAATATATCTTCCGTACACTTTCCAAAACAAGACAAAGGTTATTTGCACCCTTGTAGTGGAGCAATTGACAGTTTCTTCAATTCTCGGTATGGACGTTTGGCTCGCCTTTGGAATAACACCCGAGTTGCAAACTTGTGCTCTGTTGAACTCAGGTTCGGAACGGGACGAAGAAGTAGATATTGATGCTCCGAGTGAGTCTATACTTACTCCGGAACAGATGGCCTGTATCAAAGAGGTTAAGACATGCTTTCAGGCTGTAGTGCCCGGAAAATTGGATACGACCTCGCTAACAGAGCACAGGATCTTAATTAAGGAAGAATTTCAAAGTGCCACGCCTGTTTGTCGATATCCTTATAAAATGAGCCCAAGAAAACTGTCTAAAGTCTGGGAAGAAGTCGACCGTTGGCGTTCTATGGGTATTATTGAAGAGTCAGATTCCGATTGGTCTTTGAATATTGTCGCTGTGACCAAACCAGACGACTCTATTCGGCTTTGTCTAGATGCCCGGCCTCTTAATGAGCGTACAGTACATGATGCATACCCTCTGCCGCATCCCGGGCGCATTTTAGGAAGCCTGCCTAAAGCCAAGTACCTGTCTACTATAGACTTAAAGGAGGCTTTTCTCCAGGTTCCTTTGGCTAAGGGCAGTCGTAAGTTTACTGCTTTCAGTGTGCCCGGCAGGGGTATGTTCCAATTTACTCGTCTACCCTTCGGTCTCGTTAACAGCCCTGCCACTTTGGCACGTCTGATGGACCAGGTGTTAGGACGAGGAAAGATGGAACCGTACGTTTTTGTTTACCTAGATGATATCATCGTGCCGATACTCGATTACGAGCGGCCGGTGACGGTTACTAAACTGCGCCGATTCCTTGGAATGTGCGGTTACTACCGGCGTTTCATTGATCGGTTTAGTGAGGTAACCGCACCTTTGACCGACCTCTTGAAAACAAAGGCCAAGAATATTGGCTGGAACTCCGAAGCAGAACTCGCGTTCCTGGAGGTAAAGGAACTTTTAGTCGCTCTTCCAGTGCTTGTCCCGCCAGATTTTTCGAAGGAATTTATTCTGCAGACAGATGCCAGTGACACTGCTGTCGCGGCTGTCCTGGTGCAACAACATCCAGAGGGGGAAAGAGTGGTAGCTTATTTTTCACATAAGCTAACCACCCCCCAACGGAATTATCACGCTACCGAAAAGGAAGGTCTGGTGGTGATAATGGCGGTTGAACACTTCCGAGGTTACTTGGAAGGTTATCATTTTCGACTTGTCACTGTTTCATCAGCCATTATCTGGATACTGAAGACCAAATGGAAAACCAGTTCGCGCCTGAGTCGGTGGAGTTTGGAACTACAACTCTACGACATGTCCATTGAGCGCCGGAAAGGGAAGGACAATGTCGTTCCGGATGCCTTATCTCGGGCTGTAGCAGCCATTTCGGCATTGTCCACTTCAGACTGGTATTGTTCCATGAAGTCTAAAGTTTCAGATAATCCTGATGATTATCCTGACTTTAAAGTCGAAGATGGTAGACTTTTCAAATACGTGGCCTCGAAAAGTGTACCATTCGACTCTCGGTTTAGTTGGAAATTGGTCCCAACTCCCGAGTGTCGAGAAGAAATCGTGCAACGTACCCACGATGAACTGCTTCATGTGGGTTACGATAAAACGATTCACGAGGTTCAGAAACGCTATTTTTGGCCTCGTATGGAACCAGAAGTTCGCGAATATATTCGCCAATGTGGAACTTGCAAAGAGATAAAAGCACCATTTAGCTCAGTCCAACCGGAAATGGGTCAGTCACGCACAACCGGTGCACCGTGGCAGATGATTTCGGTGGACTACATAGGCCCACTTCCTCGAAGCAAACGGGGCAATCAACACTTGCTAGTCGTCCTCGACGTCTCCAGCAAGTACGTAATGTTGACCCCCATTCGCAAAATTTGCAGCGCCTCACTTTGTGCGACCCTTCGCGAACAATTGTTCAACCGCCATGGAAGTCCGAAAATCCTGTTGAGCGATAATGGTTCGACGTTCATCTCCAGAGAACTCAGCCGATTCCTAAAAGAAACAAATGTTACACATTGGCTGAATTCGAGATATCATTCGCAGGCTAACCCGGTAGGACGAACGAATCGTTATAGAACGGCAATACGCGCGTACGCCCGCACGGACCAGCGCAACCGGGATGCCCACATCTCTGATGTGGAGCGCATCCTAAATACAACGGTTCATTCTTCTACCGGGTTTAGTCCTCATTTCGTCGTCCATAATTGCGAAATGGCATCAGGGGATGACTACTCCAGGATTTCCGGGGAGGGTGATCTAAAATCAAGACAGGACCAATTAGAGACAATTCGGGGTATTGTGGTTAAAAATCTTAGTAAGGCCTCCGAGGGTGCTCGACAGCAATACAACGGGCGACATCGCCAACTTGCGAAGCCATTCGCCGTCGGTCAAATTGTTTACCGACGAAACATGAAGCTGTCGAACGCTCTCGAACCTTATAACGCTAAAATTGGACCACAATACTTACCGGCAAAAGTTCTCGCCAAAAAGGAGTCTTCGTCTTACGAGCTGGTTGATCCTACCGGGAAAAATCTTGGTGTCTGGCCAGCAAATCTTCTCAAAACAGCATAA
- Protein Sequence
- MSNAAVKRGEREQAIKLAMIAIKFGKSLRAAAGEYGIPRTTLLRHKRLNAGLMVQADPLHPTISMEDVQICKRGRPPVLPEEPERAFGYARTSSSLGIPVPENWIANAKAGPVWFRNFLRRRPNLSMRSPESTSIARVSAFYPTNVDKFFDLIRTVAENITFEPNSTWKLDETGVTIVQKPQQVVSRRGVKRVGRVTSADRSPLVTMLLADNFASKSPSENTKKKPGVQTEKNFVEGNSKPESKQKAVICLDYLVEQHRPPSLGVCYNCGGFRCLSLSLLLKKRDLYQLKSQLCKDVYPIESLKLDPQIYNSFRPAHDEDYRDPLFVETIILDDPSDDRPFALVAVYGHSFKALLDSGSNATIITKKLYRKFSKSPLKGLERPVELRSANGQTLPILGQIYLPYTFQNKTKVICTLVVEQLTVSSILGMDVWLAFGITPELQTCALLNSGSERDEEVDIDAPSESILTPEQMACIKEVKTCFQAVVPGKLDTTSLTEHRILIKEEFQSATPVCRYPYKMSPRKLSKVWEEVDRWRSMGIIEESDSDWSLNIVAVTKPDDSIRLCLDARPLNERTVHDAYPLPHPGRILGSLPKAKYLSTIDLKEAFLQVPLAKGSRKFTAFSVPGRGMFQFTRLPFGLVNSPATLARLMDQVLGRGKMEPYVFVYLDDIIVPILDYERPVTVTKLRRFLGMCGYYRRFIDRFSEVTAPLTDLLKTKAKNIGWNSEAELAFLEVKELLVALPVLVPPDFSKEFILQTDASDTAVAAVLVQQHPEGERVVAYFSHKLTTPQRNYHATEKEGLVVIMAVEHFRGYLEGYHFRLVTVSSAIIWILKTKWKTSSRLSRWSLELQLYDMSIERRKGKDNVVPDALSRAVAAISALSTSDWYCSMKSKVSDNPDDYPDFKVEDGRLFKYVASKSVPFDSRFSWKLVPTPECREEIVQRTHDELLHVGYDKTIHEVQKRYFWPRMEPEVREYIRQCGTCKEIKAPFSSVQPEMGQSRTTGAPWQMISVDYIGPLPRSKRGNQHLLVVLDVSSKYVMLTPIRKICSASLCATLREQLFNRHGSPKILLSDNGSTFISRELSRFLKETNVTHWLNSRYHSQANPVGRTNRYRTAIRAYARTDQRNRDAHISDVERILNTTVHSSTGFSPHFVVHNCEMASGDDYSRISGEGDLKSRQDQLETIRGIVVKNLSKASEGARQQYNGRHRQLAKPFAVGQIVYRRNMKLSNALEPYNAKIGPQYLPAKVLAKKESSSYELVDPTGKNLGVWPANLLKTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -