Wsmi051131.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:205824507-205824821[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-08 2.3e-05 25.7 0.0 4 38 19 52 17 59 0.84 2 2 5.1 2e+03 0.3 0.0 2 14 77 96 76 104 0.61
Sequence Information
- Coding Sequence
- ATGGCACTTACACCTATTCGTAAACCGACAAAAAGACGGTCGTGGAACGTTGAGAATCTGTCCCGAACCATGAAAGCCGTACACCTCGGTTTGTCTAAAACTCAAGCAGCAATCCAATACGGCATTCCCAAACGTACTTTGAGGCGGTATTTAGATTCAACGGTACATCCAGAGAATGTAAAGTTAGCTCGACTGGGAAGTTTTGCCAAAGTATTCTCGCCCCAGCAGGAGGAGCAGCTGGCCGCGTACGCGATCGAAATGTGTCAATGCTTCTACAGATTAACGACTCGGAAAGTCGGAACATGCGAAGCTTAG
- Protein Sequence
- MALTPIRKPTKRRSWNVENLSRTMKAVHLGLSKTQAAIQYGIPKRTLRRYLDSTVHPENVKLARLGSFAKVFSPQQEEQLAAYAIEMCQCFYRLTTRKVGTCEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -