Wsmi006963.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:83895300-83897170[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-10 3e-07 31.8 0.0 5 37 19 51 18 58 0.92 2 2 9.4 3.7e+03 -0.5 0.0 30 40 66 77 63 79 0.83
Sequence Information
- Coding Sequence
- ATGGTTCGCgtgtacaaaaaaaagtttaaccGCGGTTTGTGGACGGTTCCAGCTTTGGGAAGAGCATTGGCGCTAGTGCAAAGGGGCTTATTGTCCATTCGAGAAGCAGCCACCACCTTTGACATACCTCGCGAAACTCTTCGCCGACGAAAAGGAAGTGGAGGACGAGCTAGCGGAACATCCGCTTCTGTTGGAGAGTCGACTCTTTGGATTGAATTGCTTAGACGAATCGCAGGTAACTGCTGGCTTGTAGGATTCCGTAAACGCCATCCGCAATTGACGCTTCGCACTCCGGAAAGAACTTCCATTGCTAGGACCCGATGCTTCGATAAGCCGACGGTggagaaatttttcaaaatgctgACGGAAGTAATCGACGAAAGAAAAATTTCCCCTAACCGGCCATATAACATGGACGAGACAGCTGTCACATCCATCCAATCCCGTCCGTCACGGATACTAGCGGAGGAAAGGAAGGAAGCAAATTGGAACTATTACATCTGCAGAGAGAGGAGTACTAGGTATACTGCTGTTATCTGCATGTCCGCCACCGGAAACTTCGTACCTCCGATGCTTATCTATCCGCGCGTTCCCACGGATCCTGTTTTGCTAATACTTGACGGACATGTATCTCATACTAAAAACCTCGAGTTCTTTGAGTTGGCTTGGGACAATTACGTAACAGTTGTATCCCTACCACAACATTGTACACATCGTCTACAACCGCTGGATGTATCCTTCATGGGACCACTGAAGACATACTACAGCAAGGCTATTGGAAAGTTCCATCGGATTACGAATGGACAGCTAGTGCGTCAGGCAAATATTGCTGCACTCTTCGGTGAAGCGTACAAGAAGGCTGTTGTGGTGGCAACTGCCGAGAACGGATTTCGTCAATGTGGCATATATCCCCTAAACATGTCTATATTCAAGGATAAAGATTTCAGTCTTTCTGAAACCACGAATGTGCCACTAGAAACACCGGATAAGCAACCCCTTGAAATGAAGCAAATGGAAATTTCGACAGTTTCAAAATTCAATGCATCGGTCGATCCGCCGGCTACAGTGgagcaaataaatatttcaacATCGGACAGCCAGTCCTGCAAACCAGAGGATCAGTGTACTACAACGGAAAGGCATAGAATTCCACCACCCACACCGGTTTCACAAACTCCGGAAGACGACGATTCTGATTTCGAAGATATTATGCCAGTCCCCCAGTTGAAAGAACGAGCCGTTAAAAAGCGAGGAAGAGCTTCGGAGAAAGCAGCGGTTTTGACGAGCGATGAGTCCACCAACAATCTTCGGCTTAAAAGGATGAAGAAGGAGCAAGCATCTGAAAAGCGCGAGAAGGAGAAAGCACGTAATAAGCGCGAAATATCGAAATCCGGATTTGCTACGGAAAATAAGAATGTTGAGAATCTTCCTTCGTTTATGAAGACAGCTCGTCCCAAGCGTTAG
- Protein Sequence
- MVRVYKKKFNRGLWTVPALGRALALVQRGLLSIREAATTFDIPRETLRRRKGSGGRASGTSASVGESTLWIELLRRIAGNCWLVGFRKRHPQLTLRTPERTSIARTRCFDKPTVEKFFKMLTEVIDERKISPNRPYNMDETAVTSIQSRPSRILAEERKEANWNYYICRERSTRYTAVICMSATGNFVPPMLIYPRVPTDPVLLILDGHVSHTKNLEFFELAWDNYVTVVSLPQHCTHRLQPLDVSFMGPLKTYYSKAIGKFHRITNGQLVRQANIAALFGEAYKKAVVVATAENGFRQCGIYPLNMSIFKDKDFSLSETTNVPLETPDKQPLEMKQMEISTVSKFNASVDPPATVEQINISTSDSQSCKPEDQCTTTERHRIPPPTPVSQTPEDDDSDFEDIMPVPQLKERAVKKRGRASEKAAVLTSDESTNNLRLKRMKKEQASEKREKEKARNKREISKSGFATENKNVENLPSFMKTARPKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -