Wsmi046067.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:145107659-145109614[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-10 1.5e-07 32.8 0.1 2 36 16 50 15 56 0.93 2 2 4.7 1.8e+03 0.4 0.0 3 27 341 369 339 372 0.71
Sequence Information
- Coding Sequence
- atggtgcgaacatatataaGACAATCTGGGAGACAGAATTGGTCAAAAGAGGCCCTCCAGGCGGCGTTGACCACTATAAGGCGAGACGGAACGTCCACGAAACAAGCTGCAAAGCATCACGGTATTCCGCGGCAGACGTTAGCACGTTATGAGAGTAAATACCGAATGGAAATGGCGGGGCAGGAGGTGAACCAAATTGGTTCCTTCAGGACTATTTTCACACCAGCTGAAGAACTAGAATTGGTGGATTATATTTTGGACATGGAAGTTCGATGCTACGGTATTACCACCCGTGTAATCAGAAGCCTAGCGTACCAACTGGCGGAGAGAAACGAAATAGCACACGTCTTCAACAAAAAAACGCAGCTAGCTGGCTGGGATTGGCTGCGTGGCTTCCGTAAGCGTCATCCTGAATTATCTCTGCGTGCTCCAGAGGCAACCTCTGCGGCTCGGTTGCAAGGCTTCAACAGGGTAGCGGTGAACAATTTTTTCGATGTTTTGACTAAGACGTTAGCGGAAGGCAACTTTACACCAAGCAGAACGTTCAACGTAGATGAATCATCCGTCCTTACCgtacaaacaaaaaaatcaaaagtactTGCTTTAAAGGGAAGGCGACAAGTAGGATCGGTAACATCTGCGGAGAGAGGACTGCTGTCCACAACATGCATTTGCATGTCTGCCTCTGGAAATTTCATTCCGCCGATGATGATATTCCCCAGAGCTCGTCTGACAGAAGCTTTGAAAAAAGGTGCCCCTCCGGATACGTTTTTTGTTTGTAACTCATCTGGCTGGATGACAGCAATCGAATTTAACGCCTGGTTTGGTCACTTCCTTCACCACACACGCCCAACAGCTGATTCTTCAGTCCTTCTCCTGCTTGATGGACACAGGTCGCATACCAAGAACCTCGCCTTTATTGAACGAGCTCGTGAGTGCTTCGTGACCGTTGTGACTCTACCTCCCCATTGCAGCCATAAGCTTCAGCCTCTTGACGTTAGTTTTATGGGACCACTTAAAACTGCTTTTTCAAAAGCGATCGAAGACTACCTGAAAGCAAATCCTGGTAAAGTTGTAACATTAAACGATATCAGTGAGCTATTTGGATTGGCATACATGCAAACGGCCAATGCGAAAACGGCTCAAAGTGGATTCAGTGCGACAGGTATTGTTCCACTAAACAGATTTGTATTCACCGACAGCGATTTTGCCCCCGCTGATGTTACAGATGCTCTCTCAGAGACTAATCCAAACCCAGGCAACGCGCTGGATGTTTTTAATGGCTCCATTCATGATATAACAGACAGCTATATAAAGATAGAATCAATCCCAGATACCGAGTCTTCATGTAGTGAAGCGGGTAAGGTGTCTGGCGAATTCAAATCACTGGATTGTGAGCCAAGCTCTTCTCAGATCAGCAATAGTCCATTCGGAGATGTTGGAAATAGAACCAAGTCGAGTCCTGAAATGTTGCTAGCGAGCTCGTTCAAGAGGGAAAAGGCCTGCAATATAACAGCAAGTCCTTATCGGAATAAACTGAGGTCACTGCAGGCGTTGAAGGATATAGGGCACCTGAAAAAAACCACAAAGGTAGAGCAAAAATCCGTTTCTAACAATGGTTCCGAAACCTCTAAGCGCAAACGAGGTAGACCAAAAGGAACCAGAAACCAAGTGAAGACAATACAAGATTCACTTTGTGAACATTGTGGCAGCTGCTCTAGTTTGTCAGAGGATGGCCAAAACTGGTCAAAATGTTCGGAGTGCTTCTTGTGGTTTCATGAATGCCTAGAAGATTCACGATGCCCATCTTGTGATTTCGCATAG
- Protein Sequence
- MVRTYIRQSGRQNWSKEALQAALTTIRRDGTSTKQAAKHHGIPRQTLARYESKYRMEMAGQEVNQIGSFRTIFTPAEELELVDYILDMEVRCYGITTRVIRSLAYQLAERNEIAHVFNKKTQLAGWDWLRGFRKRHPELSLRAPEATSAARLQGFNRVAVNNFFDVLTKTLAEGNFTPSRTFNVDESSVLTVQTKKSKVLALKGRRQVGSVTSAERGLLSTTCICMSASGNFIPPMMIFPRARLTEALKKGAPPDTFFVCNSSGWMTAIEFNAWFGHFLHHTRPTADSSVLLLLDGHRSHTKNLAFIERARECFVTVVTLPPHCSHKLQPLDVSFMGPLKTAFSKAIEDYLKANPGKVVTLNDISELFGLAYMQTANAKTAQSGFSATGIVPLNRFVFTDSDFAPADVTDALSETNPNPGNALDVFNGSIHDITDSYIKIESIPDTESSCSEAGKVSGEFKSLDCEPSSSQISNSPFGDVGNRTKSSPEMLLASSFKREKACNITASPYRNKLRSLQALKDIGHLKKTTKVEQKSVSNNGSETSKRKRGRPKGTRNQVKTIQDSLCEHCGSCSSLSEDGQNWSKCSECFLWFHECLEDSRCPSCDFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -