Wsmi053050.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:235973543-235974421[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-12 3.9e-09 37.8 0.1 2 38 13 49 12 52 0.93 2 2 8.4 3.3e+03 -0.4 0.2 31 45 126 140 126 140 0.86
Sequence Information
- Coding Sequence
- atgCAAAGAACTAAGCAATATCGGTGTAATTACTCTGAGACTGAGATTTCCACCGCTGTTCTCAAAGTACGTGGTAAGCAGATGGGAGCAAGTAAAGCTGCTAAACATTATGGAGTGCCTAGATCGACGATCCGGTCTCGTTTGGAACTGCAGCAACGAGAAATCTGCTGTTCTGGCCGAATGTCAGTATTGACGCAGCAAAAGAAGGATGATTTTAAACAGTGGATTTATGACATGCAGCGTAGAAGTTTTCCCGTCACAAAAGACATGTTGCAAAATAACGTTAAACAGTTCCTCGATGAAAATCCCAGAGAAAATCCATTTATTGATAATCGCCCAGTATTTCAGGCATTTGAGGATTACTTGAAGATGCCACCCACTCTccaaagagaaaacaaaagggAATACAGGTCCAAACGGTATCACGTTTTAACATCAGATGAATTTGTTCGTGAATATTCTCAGAAGGAGGAGGAGAAAACACGCCTCGAAGAAGAGAAGGAAGACAGGAAGCGAATTCGAGAGGAACGTAAACTCGAAAAGGATTTGAAGAAAGAGGGGCAAGCGAAGAAGAAGGAACAAAGGAAGAAAAACGTGTACGTGTAG
- Protein Sequence
- MQRTKQYRCNYSETEISTAVLKVRGKQMGASKAAKHYGVPRSTIRSRLELQQREICCSGRMSVLTQQKKDDFKQWIYDMQRRSFPVTKDMLQNNVKQFLDENPRENPFIDNRPVFQAFEDYLKMPPTLQRENKREYRSKRYHVLTSDEFVREYSQKEEEKTRLEEEKEDRKRIREERKLEKDLKKEGQAKKKEQRKKNVYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -