Wsmi003438.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:39849643-39855960[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-11 4.7e-09 37.5 0.0 1 44 17 60 17 61 0.94 2 2 6.2 2.4e+03 0.0 0.0 4 19 285 305 283 307 0.83
Sequence Information
- Coding Sequence
- ATGGCAAGAAACTATAAGTCGACTGCattgaagaaatacgaaaagccAGATCCAACTATACTGAAGCTAGCCGTGAACGATGTTAACAACAAAAAATTGTCGTTGCGGGAAGCAGCTAAAAAATACAGCATTCATTATTCTGTAATCTATCGTCATTATAAACGCGGGAGTGCCCTTAAACCTCAAGGAGGACAAACTTGTCTAACAAAGAAAGTTGAGCAACTGTTGGTTGATAGACTAAAGGTTTGTTCCGATTGGGGATGTCCTATTAATTCGGAAACGTTGCGTTGCCTAGTTAAGGAGTACCTGGACAGGCAGCAAAGGAAGGTGCCAAAGTTTAAAGATAATCTGCCCGGCAGAGATTTCTTGTTTTCCTTTTTAAAACGGCATAAGGAGAATTTAGCATTCCGAATGTGCCAAAATATCAAGAGAAAAAGAGCTGCTATTTCCCGTGACGACATCAACCAATATTTCGACAAATTATCAATCGAGCTTCAAAACGTACCACCGTCCAACATTGTAAACTTCGACGAGACGAATTTGAGTGACGACCCAGGCAGAAAGCGAGTAATCACTAAACGTAGATGCAAGTACCCCGAAAGGGCCCAAGCCCCCCCAGCGGCTCCCACCTTCGAGGATCTAGTGAAAGAGCATGAAGCTAGAATGCTGGCCGTTCTGAATCTGATGGTTACCGGGTCGGCGGCACCGCCGGAGGTGAAGGAGACCGTTCTCGCCAGTGCCCAGCAGGAGTTGGCCGACTGTGTCCAACAGGCGTCCACACATGTCAACCACGATTTTGGTTGGATCCGTTGGGACGATACGAGAAAGGCACTTTTGAAGACAGCTAATTTGGATCTGGCAGAGGCAATCGATATTTACCGTGCGCCGAAATTGATGGAAGGTAGAATGACGACGATGAAGATCAAAGAAGAGCCACGCGATTCGGAGCAATCTGCGGAAATGATTGCGAAACGTCCGGTGCTTCTTCCAAGCTACTCCCAAGCTAGCAGTATCCACCAGCAGCTGCAACGATGGTCTTCGGCGGGTGGTGTCTCCTCTGCTCCTTTGCACTTAGCCGGGGGTAGTTAA
- Protein Sequence
- MARNYKSTALKKYEKPDPTILKLAVNDVNNKKLSLREAAKKYSIHYSVIYRHYKRGSALKPQGGQTCLTKKVEQLLVDRLKVCSDWGCPINSETLRCLVKEYLDRQQRKVPKFKDNLPGRDFLFSFLKRHKENLAFRMCQNIKRKRAAISRDDINQYFDKLSIELQNVPPSNIVNFDETNLSDDPGRKRVITKRRCKYPERAQAPPAAPTFEDLVKEHEARMLAVLNLMVTGSAAPPEVKETVLASAQQELADCVQQASTHVNHDFGWIRWDDTRKALLKTANLDLAEAIDIYRAPKLMEGRMTTMKIKEEPRDSEQSAEMIAKRPVLLPSYSQASSIHQQLQRWSSAGGVSSAPLHLAGGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -