Wsmi022961.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:99082989-99083783[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-12 6.4e-10 40.3 0.1 5 40 19 54 16 58 0.93 2 2 5.8 2.3e+03 0.1 0.0 14 29 165 182 161 189 0.70
Sequence Information
- Coding Sequence
- ATGGTTCGGAATTACAAACGGTTGTCGAGGCGCAAAAAATGGTCACAGTCATCATTGGCCACTGCTATAGACGCGGTTATTTCACATCGAATGTCAGTGAACCGAGCGGCTATTGCACACGGCATTCCACGGCAAACGTTAAGCCGACATTTAAGGCTGCGTCGAACAGATTCGGCGCAGCATAGCTTGGGGCGATACGCAACGGTGTTCTCGATCCAGCAGGAGGAAGAATTGGTGCAGCATGTTTCGAACATGAAGAAGCGATTCTACGGGGTAACTCTTCGGGACCTACGAAGTTTGGCGTATCAGCTGGCAGAGCAAAACCAGATTCCTCATCCGTTTAACAAATCGACAAAACTAGCTGGGCTGGACCGGCTTCACGGATTCAGGAAGCGGCATCCTGAACTTTCCTTGAGAACACCGGAAGCAACTTCTGCAGCACGAGCTCAAGGCTTCAATAAAGTAGCTGTGgatcatttttttaatgttctggGAGAGGCGCTTTCCACTGGCAAATTTCCGGCAAGCCGGATTTACAACGTCGATGAGACTTCAGTGGTATCTGTTCAAACAAAGAGATCCAAGATTTTGGCATTGAAGGGCCGGAAGTTTCCTGCCACCGATGTTGATTCTCCCGCGCGTTCGGTTGACTGA
- Protein Sequence
- MVRNYKRLSRRKKWSQSSLATAIDAVISHRMSVNRAAIAHGIPRQTLSRHLRLRRTDSAQHSLGRYATVFSIQQEEELVQHVSNMKKRFYGVTLRDLRSLAYQLAEQNQIPHPFNKSTKLAGLDRLHGFRKRHPELSLRTPEATSAARAQGFNKVAVDHFFNVLGEALSTGKFPASRIYNVDETSVVSVQTKRSKILALKGRKFPATDVDSPARSVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -