Wsmi022902.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:98285289-98286770[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-09 4.2e-07 31.3 0.0 4 38 274 309 273 314 0.93 2 3 4.2 1.7e+03 0.6 0.0 27 35 345 353 341 358 0.85 3 3 5.3e-08 2.1e-05 25.9 0.0 6 37 384 415 380 419 0.90
Sequence Information
- Coding Sequence
- ATGAGTCGAACGAATGTTTCTTGCGTGAAATGGGTGGACTTTAGTGATCACATGGTTTCCACCTTTATGGAAGTGTACCTGAATGCGTTATATACTGATGTGACTTTGGTGTTGGCCGATGGTGGTCAGCTAATGGCCAGCCGAATGGTATTGTCGATGGCTTCCCAGTTTTTTGACGACATTTTCCGAGCTACATTTGCTTCTGTCGGGTTTTGCGCCAATGATTTACAGGAAAGTAAAATAATGATACCAGATGTGAAGTTCAATGTAATGAAGAATGTGCTTCATTTCATCTACACGGGGAAGGTGCATATGAACGCCCGTGATATGTCCGATTTTTTCGAGGTTTGTAAGTTGTTACAACTAAAAGGACTCGACTATCAGAATGGGAATATAAGTGGTGTTAAAATTAGTGGGTCCAACATAATCACTCCCGTCCAGTACGATTACGAAGAATTACAGGAAGCGTATGTAGAATCCACGGATGGAGTCATCGAAGAATCTGAGGTAACTGTTGTCGATCCTGGAATTGATGTTTCCGTAGACAGTGCTTTTCAACCACCCGAGGTCTCTAAAAGTACATCCATAGCAGAACATACGGATGTCTATTACGAGGTTGACGTTGATATTGGCGTACTGGACACAAACACTAACAGTCAGGATGCAAAGCCGGCAATGCAAGCGATTGTCATGCATGATGACGACATGAAGGAGATCAATCCACCGATAAATGCTTCCGACACGGAAGGAAGTGGTCACGAAAGTGGAGAACCTAGCGGACAGTcgaaaaaacgaacgaaaacTACTGAATATGGCAGCAGACTAAATGAAGCGATAAATACGATTATCAACGGTGGAGCCAGCTTCCGAACGGCCTCTATTCAGTTTGGCATTCCTAAAACGGTTCTTTGGCGAAAAGCCGTCAAAGCACCAAACTATAAAGCCGAACGCTGTGAGTTGCCATCGCCAAGAAAGGAAGCAATTGAAGCGTTAAAATCAGGTGAAAAGCTACTAAACATCAGTAAAAGATTGGACATACCGCTATCCACGCTGCATCGGGATAAATTGAAACTGTACAGTGAAGGTACCCTACCAGAGAACGTTTTGTTGAAACAACGAGACAAAGGCTCGGATTTTAAGGAACGTGTCCTAGAGGCAGCACAGCAGTGTGTGGCAGGCTACATGTCACAGTCGGAAGCATCCAAACTCTACAAGCTACCGAAAACAACTATTTGGCGAAAAATAAGAGCATTGAAAAGTGAGAATAACAAAGCTAAGGATGAAACACCCTCGGTGTCCGCAAATTCTGTTGAAGAAGGTCTAAAATCAGAAATGATTGAAATGTTAGAAGACAACGATGATGGCACCGTGGGGATGGAGGAACACCTGGAACCAGATTATGTCGTTTtagtgtaa
- Protein Sequence
- MSRTNVSCVKWVDFSDHMVSTFMEVYLNALYTDVTLVLADGGQLMASRMVLSMASQFFDDIFRATFASVGFCANDLQESKIMIPDVKFNVMKNVLHFIYTGKVHMNARDMSDFFEVCKLLQLKGLDYQNGNISGVKISGSNIITPVQYDYEELQEAYVESTDGVIEESEVTVVDPGIDVSVDSAFQPPEVSKSTSIAEHTDVYYEVDVDIGVLDTNTNSQDAKPAMQAIVMHDDDMKEINPPINASDTEGSGHESGEPSGQSKKRTKTTEYGSRLNEAINTIINGGASFRTASIQFGIPKTVLWRKAVKAPNYKAERCELPSPRKEAIEALKSGEKLLNISKRLDIPLSTLHRDKLKLYSEGTLPENVLLKQRDKGSDFKERVLEAAQQCVAGYMSQSEASKLYKLPKTTIWRKIRALKSENNKAKDETPSVSANSVEEGLKSEMIEMLEDNDDGTVGMEEHLEPDYVVLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524997;
- 90% Identity
- iTF_01524997;
- 80% Identity
- iTF_01524997;