Wpum006252.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- -
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000170.1:9526735-9530310[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0091 2.3 10.3 0.9 1 19 115 133 115 135 0.96 2 12 0.0092 2.4 10.3 4.6 2 23 274 296 274 296 0.91 3 12 0.00021 0.054 15.4 1.9 2 23 355 377 354 377 0.94 4 12 1.5 3.8e+02 3.3 0.9 1 23 533 556 533 556 0.94 5 12 0.00055 0.14 14.1 0.0 3 23 605 626 604 626 0.90 6 12 0.015 3.7 9.6 0.4 3 23 657 678 656 678 0.91 7 12 0.0074 1.9 10.6 3.7 2 23 720 742 719 742 0.96 8 12 0.026 6.5 8.9 2.7 3 23 757 778 755 778 0.94 9 12 1.4e-05 0.0036 19.1 0.2 2 23 823 845 823 845 0.94 10 12 3.3 8.5e+02 2.2 2.3 1 23 930 954 930 954 0.97 11 12 0.00031 0.079 14.9 0.1 2 23 968 990 967 990 0.94 12 12 0.01 2.6 10.1 0.5 1 23 1066 1089 1066 1089 0.98
Sequence Information
- Coding Sequence
- ATGTCGTTTAACCAGGAGACGTGCCTGCCAGATTCAGTGGACATCGATAGCGAGGGTTCGAGCTGCGAAGAGCGAGATTCCCGTAAGCGACTACTCGGTGATCCCGAAAATTTGCCAAAAAAACGACGAAAACAGTCGACTCCCATCAAGTTCTCGACGTCGCTGACCACCGGCGACTGCGACGAGTCGGAAGAGGAGTCGATCGAAATCCAGGGAAAGAACGATGGTGATCAACGCGAATATGATCATCAGCGTGAGCTGGAAGGTAAGCCGACGATGTCGCCGGTTTCTAAATCTATACAGGGCCACTCGACGACCAAAGACGTTAATCTGAACAATGAATTTCGCTGCCAGTATTGTAGTCAATTTTTTGATAATCGCGCGACACTCGAACTGCACTTCGAATGCGAGCACAATCTCGGTTTTCCAAGTAATAACGCCGCGTTGCATCAGCAGCATCAACACGGGCTGATAAGTAATAGCAATTCACCACAAATACAAGCTCAAGTACGAATTAGCCCGGAAACAACCGGTCATTCGGAACAGTCCATCAGTCCGATCAATCTTTCGGGTATCGCCATTAGAAACTTCGCGGCAAGCACGTCCTGGCTACCGGGACAGGGACAAATCCAAACGCAGAATGAGTCTTCGCTGGCGAAAATTGCTGCCAGGAATAACAATCACTTTCAGTCAATGCCTGCAGGTTTTCCGGGCCCTCTCGCACAATTTCTACCAATGCCCGGCTTCCCTATGCCGGATTCCACGCAAATCCAAAGAGCGGCTATGGGACAGTTTCCAAAGATATTTAATCCCGATGCGTACTGTGATCTCTGTAATAAGGAATTTTGTAATAAGTATTTTCTCAAGACGCACAAAGCTAACAAACATGGTATTTATGTGGACCCACCGATTACCCAGTCTCAGGGTGGCGATGGCGCGCCTACAAGTCCGTTCATTGCTACATCCAACGCGCTAAGTAATATACCAGCAAGTACAAGCATAAAGATGGTTGAGCAGTTTCCAAGAATCGAGAATAATGGGATTCAGCAACAGCCAACAGTACCTTGTGATATGTGTCCAAAACGTTTTAAAAATGACGATTCTTTACGAAAGCATAAGCATAAAATCCACATCGCCCACAATAGCGATGACGTTGACTCCACCCAAATGGTTCAAATGATTCTACCCTCTTCCACGGAAGAGGAAAGACAAAGTCCCGGAGGTATGGAAGCGCTCTTCAAACAAGAGTATAGTATAGAACAAGAAGAAACAGCCTACGCGTTAATTTCGAAGCCTACCTTACCCGCCTCTTCTCCACAATTAAGAGAATCATCATTTAACGGAGAACGTTGCCAACGCGTTGGTGTTATGAATCCTGAAGCCTTTTGTGAAATGTGCTGCAAGGAATACTGCAACAAGTATTTCCTTCGAACGCACAAGCTTAAGCGACACGGCATTTTAATCACGGACAATGATAAATCTCCAAGCAGTTCAATTTCAGGTATCACTTGGCATCAGGTGCAGACTAGTCCACTGAATCTTATAATGGCGGACAGCCTCGGGAACGGATCGGAATCTGGAGACCGAACCGAGGAGTACGCTTGCAGATCCTGTGCCATTCGCTTTCAAACGCAGGACTTGTACCACTTGCACGTTGAGAAAATTCATGAAAGCGTGGATCAACCGTCGCCGAAACCAGAACAGGAAGTTGACTCAACCGATCAACGAAATGATTCTATTTCCGAAGATCTTCAGAAGCTGCAAACGATGATTTTACAATTGAATGGCTTGGAATCAAATAAGGCGGCCTCTTGTGCACTTTGCGGTAAGGACTATGATACTCCGAGCGCCTTGAGAAGCCACATGGTGGCGGAGCACGGGGTGGTACCTGAGAATTTAGCGTCAACGCAACAACTACAACTACCAAATGAAAAGTCATCGCCCACAGCCATCGTCGCTCAAGCGTTATGTGCTCTGTGCGAAAGGGAATACTGCAGTCAAGACGCCTTGAGAAAACACGTCGCGGAGGATCACCAGCCGTTGACACCGACGAGTTCGACTCCTCAGCTTCCATCTTCCGTCACGTCGACTCCCAAGTCAAATTCATCCCAGCAAATGGAACGGAAGGCCATCTCTTCCATTACGCCAACCTCGAGTTATTGCGAAATTTGCAACAAAGAGCTCTGCAACAAGTACTTTATGAAGACCCACATGCAGAAGATGCACGGCATCGAGATCGAGAATGGTGCACAAATAGGAGGTGTCATTTGCAACATCTGCAAAAAGGAACTGTGCAGCAAATACTTTTTACGAGTCCACAAGCAAAATACGCATGGCATCGTCGAGGATGGTGCCGCAACTGGGAAACAAGATAACTTTGAACCTCCACCGAACGCCGAAGACCTGGCCTTGAAGCCTGAACAACTCGGCGATCTGAGTCTTCGTTACATCACTCACTTCACGGAAGTATGCCCGATCTGCAATCGTCGATTTCGCAGTCCAAAATGGCTGAAAGTTCATCTGCAAGGCGAGCACGGTAAGGCCGGAATAGAAAAGTGGCGTGAAATCGAACAGTATCAGCAGTCAAGCCCGAAGACCGCCGTCGCCCGGATCCCAAACATTCCAAAGAGCACGCAACATCAGCAGCAAACACACGCGGCTACAACTCTTAGGATACCGAACGGCTTTGAACCTAATCAGCAAATAAGGGAAGATCTAGCTGCTCTGGGTAATCAAGTTCTTTCAAACTTCTTCGGTGGTTCGAGCGACGACCAGCAACCGCAAGCCTACCGCTGCTCCCAGCTCCACTGCAATTTCTCCACGTCTATTTTGCCCCTCTTTTTTCTACACGAGAGATCGCACAGCCAAGAAAATACGGCCCTGGATAACGAGCGTATGATGCAGTGTCCGATTTGCGCGCAGTCGTTCGCCCAACCGGAAATGCTCCGACAGCACGTAACATCTCGGCATCCAAGTCCATTTCCAGGGTTGCTCTCGCAGTTTCCCATACCACCTCTACTCAACGACTTTAACATGAGCATCGAGCAACAGCCCCAATACCAAGAGAGGAACGATTACGCGGATACGAAAGAAGATTTGCGCCAACCGAGCCCCCAGATCGTGAACGAGATCGAGCCGAATAAAATGAAGAAGCAAGAGGAAAGCAACGCAGTTCAGGTGATGCCTCAGGGAGCATACAAATGCGCCCAATGCGGTTTCGCCACGGCTAATCTCAATCGTATTAAAAAACACATTAGAAAAGACCATAAGAGCATAGGGGATCCAGCAGAAACGGCTCTCGCCGAGCTCACCAAAACACTGAAAGACGTGGCAAACAAGCACAAAGTCCCGGCGAGCTACGCCATGCCACAGGACGTCAGTCTCACGCCCGATAAGACCATAATGCAAGCGTTTATCATCGAAGAACTGGAAAATCCACAGAACGGCGCCAACGGATGCAACAACGACGACACGAACCCAACGTCCAGGAGATTCGCGCCTGCCCTTGTTTTTCTACCGGTTAAAACGAGGCTTAGCGGCTCTCTCACCACGTCCTTCACGCTAAACCCCGCCTGA
- Protein Sequence
- MSFNQETCLPDSVDIDSEGSSCEERDSRKRLLGDPENLPKKRRKQSTPIKFSTSLTTGDCDESEEESIEIQGKNDGDQREYDHQRELEGKPTMSPVSKSIQGHSTTKDVNLNNEFRCQYCSQFFDNRATLELHFECEHNLGFPSNNAALHQQHQHGLISNSNSPQIQAQVRISPETTGHSEQSISPINLSGIAIRNFAASTSWLPGQGQIQTQNESSLAKIAARNNNHFQSMPAGFPGPLAQFLPMPGFPMPDSTQIQRAAMGQFPKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDPPITQSQGGDGAPTSPFIATSNALSNIPASTSIKMVEQFPRIENNGIQQQPTVPCDMCPKRFKNDDSLRKHKHKIHIAHNSDDVDSTQMVQMILPSSTEEERQSPGGMEALFKQEYSIEQEETAYALISKPTLPASSPQLRESSFNGERCQRVGVMNPEAFCEMCCKEYCNKYFLRTHKLKRHGILITDNDKSPSSSISGITWHQVQTSPLNLIMADSLGNGSESGDRTEEYACRSCAIRFQTQDLYHLHVEKIHESVDQPSPKPEQEVDSTDQRNDSISEDLQKLQTMILQLNGLESNKAASCALCGKDYDTPSALRSHMVAEHGVVPENLASTQQLQLPNEKSSPTAIVAQALCALCEREYCSQDALRKHVAEDHQPLTPTSSTPQLPSSVTSTPKSNSSQQMERKAISSITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIVEDGAATGKQDNFEPPPNAEDLALKPEQLGDLSLRYITHFTEVCPICNRRFRSPKWLKVHLQGEHGKAGIEKWREIEQYQQSSPKTAVARIPNIPKSTQHQQQTHAATTLRIPNGFEPNQQIREDLAALGNQVLSNFFGGSSDDQQPQAYRCSQLHCNFSTSILPLFFLHERSHSQENTALDNERMMQCPICAQSFAQPEMLRQHVTSRHPSPFPGLLSQFPIPPLLNDFNMSIEQQPQYQERNDYADTKEDLRQPSPQIVNEIEPNKMKKQEESNAVQVMPQGAYKCAQCGFATANLNRIKKHIRKDHKSIGDPAETALAELTKTLKDVANKHKVPASYAMPQDVSLTPDKTIMQAFIIEELENPQNGANGCNNDDTNPTSRRFAPALVFLPVKTRLSGSLTTSFTLNPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01217020;
- 90% Identity
- -
- 80% Identity
- -