Basic Information

Insect: Wiebesia pumilae
Gene Symbol: -
Assembly: GCA_018907045.1
Location: JACCHZ010000170.1:4066576-4067529[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0097 2.5 10.2 0.7 3 23 44 65 42 65 0.91

2 9 0.00024 0.062 15.2 2.4 1 23 69 91 69 91 0.99

3 9 0.093 24 7.1 4.5 1 23 97 120 97 120 0.90

4 9 3.5e-05 0.009 17.9 1.5 2 23 128 150 127 150 0.95

5 9 2.7 6.9e+02 2.5 0.5 3 15 157 169 155 176 0.75

6 9 4.1e-05 0.01 17.7 1.3 1 23 187 209 187 209 0.98

7 9 9.3e-06 0.0024 19.7 0.2 1 23 213 235 213 235 0.98

8 9 0.00022 0.058 15.3 2.0 3 23 241 261 239 261 0.92

9 9 6.6e-07 0.00017 23.3 2.0 1 23 267 289 267 289 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0097	2.5	10.2	0.7	3	23	44	65	42	65	0.91
2	9	0.00024	0.062	15.2	2.4	1	23	69	91	69	91	0.99
3	9	0.093	24	7.1	4.5	1	23	97	120	97	120	0.90
4	9	3.5e-05	0.009	17.9	1.5	2	23	128	150	127	150	0.95
5	9	2.7	6.9e+02	2.5	0.5	3	15	157	169	155	176	0.75
6	9	4.1e-05	0.01	17.7	1.3	1	23	187	209	187	209	0.98
7	9	9.3e-06	0.0024	19.7	0.2	1	23	213	235	213	235	0.98
8	9	0.00022	0.058	15.3	2.0	3	23	241	261	239	261	0.92
9	9	6.6e-07	0.00017	23.3	2.0	1	23	267	289	267	289	0.99

Sequence Information

Coding Sequence: ATGGCTACAGTAACCTATGCCGAGGATCTCCCCATGCTTGTGAGTAGCGGGAACAACTCTTACCGTGTGCGCCGCAAGCCAAGCTGGCTCAAGGACAGTGTGACTGACTTTGACAGCTTGCGTGACATCTGTCCATTCTGTGACAAACACTTTAAAGATGATCGTCGCGTAGCTATGCACGTGCGAAATGTTCACAAAAAGCCGTACAAATGTGATCTATGCCGACGCCAATACTTCAACCAAGAGGTTCTTGAAAGGCACCGCAAAACCCACAATACCGATAGCCACTTTGAGTGCAAAGTTTGTCACCTTAAATACAAACGCGAGGAGACCCTTCAGTGTCATTACGTCCGTGTACACAGCAATATTGAAGCAAATTTACGATGTGATCACTGCGGTAAGCGTTATAAGCTTAAGCAGGATTTGATGTTACACATCAATCAGGTGCACATGTGCAGTTATCAAATATGTCGGTTTTGTGGCAAGGCCGTGAAGAACGTCAAAGCGCACGAGTGGCACCATCAAAAGAAGCTTGACATCTCAAAAAACGAGCAGGTTTTTCCATGCGGTTTATGCTTCAAAAAGTTCCGTAGTGAGACAAAGCTCGAGAATCATCTTATGCGTCACGTGCAAAGATACAGGTGCCAAGAGTGTGATGAAACATTTCCCGGCCCAGGACAGCTCATGAATCATAAATCTAAGCATAGACCTGGCATCAGCTGCATCATTTGTCAGAAGTGTTTTACCTCCAGAAGCAATTATTATCAGCATGTGCTCATGCACGCCAAGGTTAGACCCTATAAATGTGATATCTGCCGTGAAGACTTTACCCAAAGATCAACGTTGGTAAGACATAGAAAGACACATCCGGGTCCTTTACCAAATTCGTTGGCACAAGTTCCAATTGCTGATCTCGCCAGGAAGGTTTTAAAAAGCTTTAAGAATTTTACTTAG
Protein Sequence: MATVTYAEDLPMLVSSGNNSYRVRRKPSWLKDSVTDFDSLRDICPFCDKHFKDDRRVAMHVRNVHKKPYKCDLCRRQYFNQEVLERHRKTHNTDSHFECKVCHLKYKREETLQCHYVRVHSNIEANLRCDHCGKRYKLKQDLMLHINQVHMCSYQICRFCGKAVKNVKAHEWHHQKKLDISKNEQVFPCGLCFKKFRSETKLENHLMRHVQRYRCQECDETFPGPGQLMNHKSKHRPGISCIICQKCFTSRSNYYQHVLMHAKVRPYKCDICREDFTQRSTLVRHRKTHPGPLPNSLAQVPIADLARKVLKSFKNFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00464170;
90% Identity: iTF_01219261;
80% Identity: -