Basic Information

Insect: Wiebesia pumilae
Gene Symbol: -
Assembly: GCA_018907045.1
Location: JACCHZ010000106.1:3017949-3028821[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.017 4.3 9.4 1.0 1 15 598 612 598 617 0.85

2 8 0.00016 0.041 15.8 4.5 1 23 626 648 626 648 0.94

3 8 1.3e-07 3.4e-05 25.5 1.1 1 23 654 676 654 676 0.98

4 8 7.6e-07 0.00019 23.1 0.9 2 23 683 704 682 704 0.96

5 8 0.00031 0.079 14.9 3.9 1 23 709 731 709 731 0.98

6 8 4.1e-06 0.0011 20.8 2.8 1 23 737 759 737 759 0.99

7 8 0.0024 0.63 12.1 4.5 1 23 765 787 765 787 0.98

8 8 2.9e-05 0.0073 18.2 5.1 1 23 793 815 793 816 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.017	4.3	9.4	1.0	1	15	598	612	598	617	0.85
2	8	0.00016	0.041	15.8	4.5	1	23	626	648	626	648	0.94
3	8	1.3e-07	3.4e-05	25.5	1.1	1	23	654	676	654	676	0.98
4	8	7.6e-07	0.00019	23.1	0.9	2	23	683	704	682	704	0.96
5	8	0.00031	0.079	14.9	3.9	1	23	709	731	709	731	0.98
6	8	4.1e-06	0.0011	20.8	2.8	1	23	737	759	737	759	0.99
7	8	0.0024	0.63	12.1	4.5	1	23	765	787	765	787	0.98
8	8	2.9e-05	0.0073	18.2	5.1	1	23	793	815	793	816	0.95

Sequence Information

Coding Sequence: ATGGGGGAGTGTCCATTGTGTGGTCAACCAACTTATAAGGCAAGTACAAGACTGATAAAAGACGCATGTGGACATACAAAGTGCCGTTTATGTCTGCTGCAAGAAGAAAATGGATGTAGCATTTGCAAGGATGAAAAAGTTGAGAAATTCCTACATAAGAATAACTGTATGGACAAGTTTGAAATAGCAAGTTATGAAAGTCATAACAATAAGCCTCTTGAACTTGTTAATAAAATATCAGACAATTCATCACACATTAGTTGTTTATCTATTAGTAGATGTATAGCAAATAAAGAAGATTCACAGAATGTACAAATGACACAATATAAAGAAGTAGAAAAAGGATGCGATAGGACTAAAGAAATTAATTGCATTCATAATAAAACAACTGAAAGGCAACTTACTAATGAAGACGAGCAAAAAAATTGCTCATCTTCATTTGAGCCAACAAAAATTAATCAATTGAACAGTGTAACAGTTGAACTTGTTGCTGAAAATACTTCAAATGAGTTTCATTACACTGATTGTTCAGCGATTGAGAAAAGACTGTCAATAGATGAAAATACAAAAGAATCTAAAAGAATAATAGAATGTCAAAAGGAAATAGGAGATCATGTTCCATCAAATATTACACCACTTAATGCTGTAGTTGAAAAGAATCCAGATACATTTCAAAACAGTGACTGTTTATTAACTGAGAAAAGATTTCCTACAACAGAAAATATAATTTTAGTAGAAAAAATAGAAGAAAACCAGAAAGACAAGTTAGATTGCGATAATTTGAATAAAACTTCTAATCAGTTTCTTTGTAACAGAAGTCCAGATTTTAGATTATCTGATTATTTACTTTTTAAAAACAATGAAATAGTAGCTCAAAATGAATCAATTGGAAGTCCTACACAATCGCTTGGTTACAAAAGTCCAGATTTTCGATTGTCAGATTACATATTGTTTAAGAAAAAATCAGTCACAGAAGGAAGTACAACTGAAATAGAACAAGAAAGTCAAAGTGATAAGGCAGATCATGATAAGTTGAATATTCAACCTCTTTCTCTTATCACAAAAGGAAACTCAGATAATGCTTATCATTCTCACACTCCATCAGTTGACAAAAGAATTGTGGTAGGCCAAGATATAACGCAAAAAGAAGAATATCAAAATGAAAGAATAAATTATGATCATTTGAAATGCTATGAATTTCCAAGTTATTCAGCAATTGAAAAAAAACTTAGAGATAACGAAATATTAATAGATAAATCAGAAAATAATCATAATAAAGAAAAATATAATAACGAATTAAATAGCACATCTGTTGAATTTATTATCAGAAATTGTCCATCTGAGAAAATAGTTAAAACACACGAATGTGATAAGATAGACGTTAATCGAAATGAAAAAATTGATGATGAAGATAAAGAAAACAAAGAAAAGTACAGTGAAAAAAAAGAAAATGAAGTAAATATAAAAGAAGGAAATAATGGGGAATCAGTTTCCTTATCATTTGTCAATCATGGATCTCATAAAGCTAAAAATAAAATACAAGAGGATAAAAATAAAGAAACAGATAAGCAAATCAAGTCTTTAACTAATCAACAACAACATAAAAATATAGAGGAACAAAGCAAGGAAAATGATACACAAATTAAAATTCGAAAAGGAAAAAGAAAGAGAAAACCCAAAGTTCTGCTTTATGAAGGCGATTTGGAGGAGAAGAAACGGGTATCACCGAAGCAACGCAAGCACAGCAGAGACTGGAGTCACATAGTGGCGATATCAGGTAGCACGGTGACGTATAAGTGCACCTTCTGCGAGAAGGTCTTCAAGAATCCTCGTGGCAAGTGGTACCACGCGAGTTGTCTCACTGGACAGGCGCCCTTCCGGTGCAACGTGTGCGGCAGAACCTTCACCAAGCGCTCGCACTTCGAGTACCACGACAGAATGCACACCGGGAACAAGCCCTTCCGATGCAACGTCTGCGACAAGAGCTTCGTGCAGAAAAGCAAACTCAATCGGCACGTACTTATACACAAACAACAAAATGACATTGAGTGTTCAGAGTGTGGAAGAAGATTTAGTACAAAACAGTACTTAAAAAACCATATGACTATTCATCAAAATAATTCTTTTAAATGCAAATTCTGCCCGAAAACGTTTACTCTTGCATTTAACAGAAAACGCCACGAACGTTCACACTCAACTGATAGGCCATATAAATGTGATATTTGCTCGAAAGACTTCAAGGGTAAATTTCTGTTAACACGGCACAGAAGAACACATGATAAAAACAGGCCTTTTTCATGCCATGAATGCCATCGGGTTTTTTTAAGTAAATTCGAAGTTCAACGTCACATGTCCGTTCATTCTGATATAAAACCGTATGCCTGCAATCAGTGCAATTTAGAATTTCGTCGGAAAGACAATCTGAATCGACACGTGAAGCATCATCATACAATAGATTACGATCCACCAAAATCTTCAGAAATTAGCACTGAAAATACAGACGTGCGGTCTAACAGTATTGCAAGAACAGTTAATAGTGATGAGAGTAAGAAATCGATGAAAGAGGAGAAACAACCGAACGAGAAAAGAAGTTCCAAGTCTAGCGATATTATGAATAAACCAGCAAATAACTTAAAGCCAAAACCGAAGCCAAAGAGAATCTCGAGATCAAACTCAACCTCGAGTACCGAGAACTTACTAAAAACACCCCTGAGTTCACCCCAGCCCCATCGACAGATCTGCTCGAAGCCCGACCTGAGCAACGCGGTGCCTGTGATCCGTGGACCGATAAGCATCAATCGTTTCACCGAGAACAGCGAGACGATGGGAGCGAGGCTTGGCTTCACGCAACCTATACCACCAGAGGAGGCCGTCGTCCTCAATCGACAGATCGAGGAGAAGATTTACACCCAAGACTCTTTCTGCAACTACCCGGGCCTCAACCGTAGGGCCAACTCTATCGTGAGAAGGAGAGACAGTTGCGGCAGCAATTCCAACTCTAACGACGGCACAGGCTTCACGTGCAAGCAAAACCAAGAGAGATCAAAGACTGTACATTTTATTAAAGACGACCCGAATGACGCACAACAGAGCGACGAGCCGAAAGTCGTGAAAGACATCAATCTGCACTGGAGGCGCAGAACTGCCGAGTCTTTGAAGACCAAGGTCGCCAAAAAATAA
Protein Sequence: MGECPLCGQPTYKASTRLIKDACGHTKCRLCLLQEENGCSICKDEKVEKFLHKNNCMDKFEIASYESHNNKPLELVNKISDNSSHISCLSISRCIANKEDSQNVQMTQYKEVEKGCDRTKEINCIHNKTTERQLTNEDEQKNCSSSFEPTKINQLNSVTVELVAENTSNEFHYTDCSAIEKRLSIDENTKESKRIIECQKEIGDHVPSNITPLNAVVEKNPDTFQNSDCLLTEKRFPTTENIILVEKIEENQKDKLDCDNLNKTSNQFLCNRSPDFRLSDYLLFKNNEIVAQNESIGSPTQSLGYKSPDFRLSDYILFKKKSVTEGSTTEIEQESQSDKADHDKLNIQPLSLITKGNSDNAYHSHTPSVDKRIVVGQDITQKEEYQNERINYDHLKCYEFPSYSAIEKKLRDNEILIDKSENNHNKEKYNNELNSTSVEFIIRNCPSEKIVKTHECDKIDVNRNEKIDDEDKENKEKYSEKKENEVNIKEGNNGESVSLSFVNHGSHKAKNKIQEDKNKETDKQIKSLTNQQQHKNIEEQSKENDTQIKIRKGKRKRKPKVLLYEGDLEEKKRVSPKQRKHSRDWSHIVAISGSTVTYKCTFCEKVFKNPRGKWYHASCLTGQAPFRCNVCGRTFTKRSHFEYHDRMHTGNKPFRCNVCDKSFVQKSKLNRHVLIHKQQNDIECSECGRRFSTKQYLKNHMTIHQNNSFKCKFCPKTFTLAFNRKRHERSHSTDRPYKCDICSKDFKGKFLLTRHRRTHDKNRPFSCHECHRVFLSKFEVQRHMSVHSDIKPYACNQCNLEFRRKDNLNRHVKHHHTIDYDPPKSSEISTENTDVRSNSIARTVNSDESKKSMKEEKQPNEKRSSKSSDIMNKPANNLKPKPKPKRISRSNSTSSTENLLKTPLSSPQPHRQICSKPDLSNAVPVIRGPISINRFTENSETMGARLGFTQPIPPEEAVVLNRQIEEKIYTQDSFCNYPGLNRRANSIVRRRDSCGSNSNSNDGTGFTCKQNQERSKTVHFIKDDPNDAQQSDEPKVVKDINLHWRRRTAESLKTKVAKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -