Wpum044186.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- ZNF341
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000124.1:1604190-1612721[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.06 15 7.7 3.9 1 23 45 67 45 67 0.98 2 13 0.00042 0.11 14.5 6.2 1 23 223 245 223 245 0.99 3 13 2.1e-07 5.4e-05 24.9 0.4 1 23 251 273 251 273 0.98 4 13 0.01 2.6 10.1 1.3 1 23 298 321 298 321 0.96 5 13 0.028 7.2 8.7 0.2 1 23 327 351 327 351 0.98 6 13 0.00014 0.037 15.9 1.5 1 23 356 378 356 378 0.98 7 13 0.0045 1.2 11.2 3.9 1 23 390 414 390 414 0.91 8 13 0.00021 0.055 15.4 2.0 1 23 416 438 416 438 0.98 9 13 5.5e-06 0.0014 20.4 0.2 1 23 444 466 444 466 0.96 10 13 2.9e-05 0.0074 18.1 1.2 1 23 472 494 472 494 0.95 11 13 0.013 3.2 9.8 0.8 5 23 509 527 500 527 0.79 12 13 0.039 9.9 8.3 9.0 1 23 533 556 533 556 0.93 13 13 0.00036 0.091 14.7 0.5 2 19 559 576 558 579 0.94
Sequence Information
- Coding Sequence
- ATGGCGCAGTCAATTTTCGATGCTTTATCGGGTGTATCTTTGGATGGTTCATCGGTAGAGTCTCTATTAGAATCTCAAACTTTGATAAGTGAAGTTGAGCAATCTGCAATAAATCAAGATGAGGAAGATATATTTCAGTGTGGTAAATGCAAAAGTCAATTTACATCTTTGCATCTTTTTGTACTTCATAAAAGAGAGCACATCAAACTACCAGAACAGAAGGTAGATTTAAGTCAGTATTTAGTTAGCAATGATAGTCATGTTATACAGACTGATGATAATTGCCGAGATGGCACACGGTACAATCCTGAAGACGATTTCAATCAGACACATCAACTTGGTGAGCCAATTATTTTGGAAGAAAATGATATCCTTTTTAGTATGGAGCAGGAAGGTGCGAGCTATTTAGCTTCTGATTCGAGCTTTAATGTCCCTATAATTTTAAGTACCAATGGAATAGAGTCTTTCGCTAATTCATCCATAACAGGAACCAATGATGATCCTTTGAATGAAGAAGTAAATGAAATGCAAGCTTTAGAGAATGATATTAATAAGAACATTGAAGACAGTAATTTTCAAGTAGCAATTAGTCTAGATATTACAGAAGCAGAAAATCCTTTTAAAATGTATGAGCAAAAGAAGTCTGATCAGATACAAAATTTAAAGTATAAGTGTACCTATTGTCATAAGCAATTTGCCAAAAAGTTTTATTGGCAGCAACACGAACGTTCGCATACAGGGGAGAAACCATATCAATGTGTAGTTTGTGGTCGACCATTTGCACAAAAGTCTAATGTCAAAAAACACATGTCATCGCACAAAGTATGGCCAGGAACAGCCATTCATTCACTACCTCCAGAGGCGCCGGTCGACGGTAGCATCGAACGCTCCTACCATTGTCAATTTTGCAAGGAGATCTTTGATTCGTATAAGGCGCTCAAAGGTCACTTGATTGTATCCCATCTAACACTCAAGGTGTACAAATGCGTGCAATACGGCTGCGGCTCGATGTTCGCCGAGCTCGAAGATTTCCTCGAACACACGCGAAGTCATAAGCGATCCGAATACCGTTGTCATGTTTGTGGGGACACTTTCAACACTTTATCCGATCTCGGGATGCATCAGTACACCCACTCCGTCCAAAAACAGAAGACCACTGAGAAGTACTACTGCTGCTCTGTCTGTAAGTCGTCTTTCTCAAACCTGGAGGCGCTCCAGCACCACACGGAGACGACGACGCACGACTACGCCTGCCCGCATTGCGGCAAGAGCTTCCTCATCGAGAGATTTCTGAGGCGACACCTTAAAACTCACGCCTCCTCCGCGAGGTTCGCCTGCGAAGACTGTGGCAAGGCCTTCAAGACTGAGCAGTACCTCGCCAATCATAAGCTCATACATAGCGAGGAAACGCCTTTTCTCTGTCCTCACTGCCCTGCGAGATTCAAGAGGAAAGATCGTCTGGGTCGGCACATGCTCATCCATGACCTGACGAAGCGGCTCAAGTGTCCGTTCCGTGGTCACCTGGGATGCATGAGCGAATTCTCGCGACCAGATAAACTCAAGCGTCACTTGCTCACCCACAGTAACATTAAGCGCTTCAGTTGTAGCCACTGCAATCGACACTTTCATCGGGCCCAGGCGCTCAAGCATCACGAGCTCAACAAGCACAGCTTGAAATGTGATATCTGCTCGCAAGCATTTAAAACTAAGGATCAATTATTAACTCATAACTGTGATCAGTCAACTGAACTCAAGAAGCACGTGACTTCACAGTTACCAAAAAAGGCTTCTGGATCGTTTAAACCACGAAGGCCAACTCCTAAGCGACAAGCTTCTTTGAAGGCTAGTGCTACCGCTTTAAGTACTTCTGATAAAGAGAAGGATAAAGTTGACGAACTTCACAAAAAGAATGTCTCAGAGACTATAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATGAAAGTTCACTTACTTTGGACTCCTTAAAAAATTAA
- Protein Sequence
- MAQSIFDALSGVSLDGSSVESLLESQTLISEVEQSAINQDEEDIFQCGKCKSQFTSLHLFVLHKREHIKLPEQKVDLSQYLVSNDSHVIQTDDNCRDGTRYNPEDDFNQTHQLGEPIILEENDILFSMEQEGASYLASDSSFNVPIILSTNGIESFANSSITGTNDDPLNEEVNEMQALENDINKNIEDSNFQVAISLDITEAENPFKMYEQKKSDQIQNLKYKCTYCHKQFAKKFYWQQHERSHTGEKPYQCVVCGRPFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPVDGSIERSYHCQFCKEIFDSYKALKGHLIVSHLTLKVYKCVQYGCGSMFAELEDFLEHTRSHKRSEYRCHVCGDTFNTLSDLGMHQYTHSVQKQKTTEKYYCCSVCKSSFSNLEALQHHTETTTHDYACPHCGKSFLIERFLRRHLKTHASSARFACEDCGKAFKTEQYLANHKLIHSEETPFLCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRGHLGCMSEFSRPDKLKRHLLTHSNIKRFSCSHCNRHFHRAQALKHHELNKHSLKCDICSQAFKTKDQLLTHNCDQSTELKKHVTSQLPKKASGSFKPRRPTPKRQASLKASATALSTSDKEKDKVDELHKKNVSETIKXXXXXXXXXXXXXXXXXXXXXXDESSLTLDSLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691382;
- 90% Identity
- -
- 80% Identity
- -