Basic Information

Insect: Wiebesia pumilae
Gene Symbol: -
Assembly: GCA_018907045.1
Location: JACCHZ010000105.1:25240067-25244505[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0034 0.88 11.6 0.9 1 23 270 292 270 292 0.95

2 12 2.3e-05 0.0059 18.4 1.2 1 23 300 322 300 322 0.98

3 12 8.4e-06 0.0022 19.8 0.7 2 23 330 351 329 351 0.97

4 12 0.00016 0.04 15.8 1.2 1 23 357 379 357 379 0.98

5 12 2.1e-05 0.0054 18.6 2.1 1 23 386 408 386 408 0.99

6 12 0.00016 0.041 15.8 0.2 1 23 414 436 414 436 0.96

7 12 9.7e-06 0.0025 19.6 0.1 1 23 442 464 442 464 0.98

8 12 5.4e-07 0.00014 23.6 1.2 1 23 470 493 470 493 0.96

9 12 2.8e-06 0.00073 21.3 0.5 1 23 499 522 499 522 0.96

10 12 4.3e-06 0.0011 20.7 2.8 1 23 528 550 528 550 0.99

11 12 7e-05 0.018 16.9 0.4 1 23 556 578 556 578 0.94

12 12 0.00028 0.073 15.0 0.2 1 23 584 608 584 608 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0034	0.88	11.6	0.9	1	23	270	292	270	292	0.95
2	12	2.3e-05	0.0059	18.4	1.2	1	23	300	322	300	322	0.98
3	12	8.4e-06	0.0022	19.8	0.7	2	23	330	351	329	351	0.97
4	12	0.00016	0.04	15.8	1.2	1	23	357	379	357	379	0.98
5	12	2.1e-05	0.0054	18.6	2.1	1	23	386	408	386	408	0.99
6	12	0.00016	0.041	15.8	0.2	1	23	414	436	414	436	0.96
7	12	9.7e-06	0.0025	19.6	0.1	1	23	442	464	442	464	0.98
8	12	5.4e-07	0.00014	23.6	1.2	1	23	470	493	470	493	0.96
9	12	2.8e-06	0.00073	21.3	0.5	1	23	499	522	499	522	0.96
10	12	4.3e-06	0.0011	20.7	2.8	1	23	528	550	528	550	0.99
11	12	7e-05	0.018	16.9	0.4	1	23	556	578	556	578	0.94
12	12	0.00028	0.073	15.0	0.2	1	23	584	608	584	608	0.94

Sequence Information

Coding Sequence: ATGACAGCAGATTCTGAAAAGGATGTTTCACATTGTCTACTTTGTGCTAGCAAAACAGGAGTGTCATCGAGAAACAGTATTTGCATTTTTGGAGATAATGCTGTAACAAATTCTGATAAACCTATAATTAATATTATTCATTCTATATTACAAACAACTATTAACAAAAAAAATACACATTCAGAAATAATTTGTAAAAAATGTTACAAACTTATTAATGAGGCTGATGAATTAGAAACTAAATTGGCAGAGATTAAATCAGAAGTATGTAACTTATATAAGAGAACCTCTACTAAATTCTTGTGGTTAAATGTTAATGGAGATGAATGTAATGATCATGATTATATTGATAATGTGGAAAATACAGAAGCAAATCCAGCAATTAAAATTCCAGAGAAAGTTAAAGAAATGAAAAAAAAAGCCGTAAAGGTTAATACTTCAGAACCACCAATTCCAATTGTATCTGAAATAATCGATACAGAAGAAATTGTTAAATCACTTGAAATAATTATAGATCATGTTGAAGAGCATGATGAACAAAGTAATGATGATATAGATAATGAAGATATTCAAGATAATAGTTTGGAAATTAATTCACCTCTTAATGAATCACAAATTGAAGAAGTAATTATAGAAAAAAGGAATTCTTTTAAAACTCAAAGAATAAGGAGAGAAGAACCTGTGGCAGAGTTGGTTTTAAGAGATGGTGACAATTATATTTGTGCTATCTGCACACATGCTGATAAAGAAAGTAGAGATGCTAAAACTATAATTGCCCATTTAAAAGATGAACATGATACTCGTCTATATATATGCGACATTTGTGGAGATCAATTTAGAAAAAGAACTGAATTATCACATCATTTGGATGATCATGTAGCAAAGGAGGAAGGCGATTTTCAGTGTGAAGTATGCAATAGAATATTCAGTAATTTACGACTTTTTCGTATTCATAAACGCATTCATTATCCTCAAGTTAAATCTTGGACATGTGAAACTTGTGGCAAACGTTATAGCTCCAAAAATTTGCTGGAAGAACATACAAATACTCATACTGGAAATCGACCGTATATTTGTGAAATATGTGGCAAAGATTTTGCATCTAAATATACACATCGAGCTCATGTAAAAACTCATCAAATTAGACCTAGGCCTTATGAGTGTTCTCAGTGTAATAAAACTTTTCTCAGTCAACAAAATTTAACACAACATGTGAAAACACATAATGGTATTAAAGAATATGTTTGTCAACAATGTGGAAAGGCCTTTGGTTCAGTTCATAATCTTGTGGTTCATAATATTGTTCATACTGGATATAAGCCGTACATTTGTCGGGTTTGTGGTAAAGCATTTGCACGAAAAGCAGAAATTCGCGATCATGAAAGAACACATACAGGTGAAAAACCTTATCAATGCGAATTTTGTGGAGCTACATTTAGTCAAAGATCAAACTTACAGTCACATAAGCGGGCAACACACTATAATGATAAAAGATACAAATGTGACGATTGTGGTAAAGGTTTCAAAAGAAGAAGATTATTGGACTATCATATTAAAGCTGCTCATACTGGAGAACGTCCTTATAAATGCGAAACATGTACAGCAACTTTTGTGTATCCAGAACATTTTAAAAAGCACATGCGTATTCACACAGGAGAGAAACCTTACTTATGCGAGGTTTGCGGGAAAGCTTTCAATAGTCGAGATAATCGTAATGCACATAGGTTTATTCACAGTGATAAAAAACCTTATGAATGTTTAGTTTGTGGAATGGGATTTATGCGGAAACCACTACTTTATACACACATGCAAACTCAAGGCCATCTGAATGATACAATTGTTGTTAATCAACCAAGACTGACTACTGAAGATGATGTGATTATACAAGAAAATAGAGTTCATTTAGTTATGGAAGGTGATACAAATCAATTAAGTGACAATGCACAATTAATTGTTACGGAATTAAAAGATCATGTAATTATTCAAGAAGGAGACGAACAAAATGTTCTTGGTTTGGCAGAAGGCAACATGAGTAATGACGAAATGGATCATCTTGTTGTAGATAGACCGATGGCTTTTGAAGATTCCGAAGCAATGGAATGTAAAACAGAAGTAACGGATGCTGTAGAAGAAGTTTATGGCTACCAAGATTCGGATGGCAATACCATAGTTTTGCCAGCAGGTGCTGACATTAAAGAAATAATTGAAGATGGAAATAAAACAATGCGATTGGTACAGATTCGTATACCAACAGATTCCGCTGGTGATGGAAGAAGTTGGTTAAGCTTAGTACAAAATTCTTGA
Protein Sequence: MTADSEKDVSHCLLCASKTGVSSRNSICIFGDNAVTNSDKPIINIIHSILQTTINKKNTHSEIICKKCYKLINEADELETKLAEIKSEVCNLYKRTSTKFLWLNVNGDECNDHDYIDNVENTEANPAIKIPEKVKEMKKKAVKVNTSEPPIPIVSEIIDTEEIVKSLEIIIDHVEEHDEQSNDDIDNEDIQDNSLEINSPLNESQIEEVIIEKRNSFKTQRIRREEPVAELVLRDGDNYICAICTHADKESRDAKTIIAHLKDEHDTRLYICDICGDQFRKRTELSHHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWTCETCGKRYSSKNLLEEHTNTHTGNRPYICEICGKDFASKYTHRAHVKTHQIRPRPYECSQCNKTFLSQQNLTQHVKTHNGIKEYVCQQCGKAFGSVHNLVVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEDDVIIQENRVHLVMEGDTNQLSDNAQLIVTELKDHVIIQEGDEQNVLGLAEGNMSNDEMDHLVVDRPMAFEDSEAMECKTEVTDAVEEVYGYQDSDGNTIVLPAGADIKEIIEDGNKTMRLVQIRIPTDSAGDGRSWLSLVQNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00305768;
90% Identity: -
80% Identity: -