Wpum038850.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- -
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000132.1:2231982-2236901[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5e-06 0.0013 20.6 0.2 2 23 335 356 334 356 0.97 2 14 1.4e-06 0.00036 22.3 2.9 1 23 362 385 362 385 0.96 3 14 7.3e-05 0.019 16.9 2.3 1 23 391 413 391 413 0.98 4 14 6.3e-06 0.0016 20.2 1.1 1 23 419 441 419 441 0.98 5 14 0.11 29 6.8 6.6 1 23 447 469 447 469 0.93 6 14 0.00011 0.029 16.3 0.9 1 23 475 497 475 497 0.97 7 14 0.0013 0.33 13.0 2.5 1 21 503 523 503 523 0.95 8 14 1.6e-05 0.0041 19.0 1.1 1 23 602 624 602 624 0.99 9 14 7e-07 0.00018 23.2 0.7 1 23 630 653 630 653 0.96 10 14 0.042 11 8.2 0.8 1 23 659 681 659 681 0.98 11 14 1.3e-05 0.0034 19.2 3.1 1 23 687 709 687 709 0.96 12 14 8.4e-06 0.0021 19.8 1.0 1 23 715 737 715 737 0.98 13 14 9.4e-06 0.0024 19.7 0.6 3 23 745 765 743 765 0.98 14 14 0.011 2.9 10.0 0.7 1 23 771 794 771 794 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCTGTTAACTCAGGCAATGTAGAACTTGTAATAAAAACTGTTGGTAGTAATGGTATTGTAATTCAAGATACAAAAGAGATTAATGAAAAAGGCGAAGAACTAGAAACAACAGAATACTTTTTAGATGTTGATGAACAAGCTACAGAAGAAGAAAACGAAGATGCACAGTTTGTACCCGTGGATGATGACTGCGAAGAAAGTCATGAAGCACAATATGTAGAGATGGAAGTTGAAGATTCTGGTCGAATAATTTTGCAGGATAAAGATATAATATTATGGAATAAACTCTGTAGGATCTGTGCAAATAATAGTGAAAGATTGATTCCAATATTTAGTGGTGAAGGAGTGGAACACAATTTGTGCAATAAAATTCATAGTTATTTACCTTTACGAGTTTCTGAAAATGACAGTCTTCCAATTCAAGTATGCTATAATTGTGCAGCAACTTTACTGGCATGGCATGAAATGTCTAAAGGTTGTCTTGATGCTCAACAGCGTCTTATGGATTTACAAACTAAATTTAATTTGAAGGATCAGTACTATAATGACTCAACAACAGAACAAGAAAATATACAAGCTATATTAGAAGTAGAAGCAACTAATGGTGAAGAATCACAGGTTCAATCTAGATGTGAGAATAATATACAGGAAGTACAGGTTGCTGATGTATCTGAATCTGACAGGTCCAGAAGATTCCAGACATCATTTATAGAGTCCCTTGATAAACAAAATGTAAGTAAGGAGCCTATTAAAGAAATAAATTCCATTCCGAGTGAAAAAGTCGATACTAGTGAAGGCAACTGCTGGATGACAGTAGCAGACTTCGCCAAATCTTCACCACAATCTGCTGATTCACCCAATTGCATTTCACTAAACATGGATTCCGAAATAGTCGCGAACGAAACTGTCAGTGTGAGAAGCAATGCCTTCAAGAAAAATAGCAAAAAGTGTAAAAAGAAAAATCTTGGCAACCAAAAGAATTCCAGCGAATCTCTCGTTTGCGGTGACTGTGGTAGATTATTCAAAGTGAAGGATTCGTTGATGCGGCACTTGCGCATACATAGAAACGAACGTCCCTTCACTTGTCACGTATGTGGAAAACAGTTTCGCGATTCTGGTGGTCTCTGCCGACACCTCAGAGACGTCCACGTCGGGCTAAAGAATCATACTTGCGAGACATGCGGTAAAAGCTTCGCATCTAAAGCTACTAAAGACGATCACCAACGAACTCACACCGGCGAACGACCTTATATTTGTGACACGTGTGGCAAAGGCTTTAAATCTAAAGCATCACTTTACACGCACAGTAAAACCCATACCGATGAGTTTCCCCACCCGTGCTTGCATTGCGAGAAGAAATTCCGTAGAAAGCAGGAGCTACTATGCCATGTTTCTATGCACACTGGCGAGAAAAATTTCGAGTGCGACGTGTGTTTCAGAAGGTTTAGGCTCAAAACGGAGCTCAGGAGGCATGCGCTTGTTCATTCGGACGATAAGCCTTTCGTTTGTAATGTTTGTGGCTTTCGTTGTAGACAAAAACGATATCTGAATAATCATGTCAAATGCGTGAATCTCGAAGACGACGACGTGATCGCCATCCTAATGACGTCAACGTCGCTGAAGAGTCGAAAAAAGCGAAAGTCGAAGGATCAATTGAGCACGGCCGTAAAGCAATCGAGATCGAGAGGAAGGAGCAAGTCGAAAGGGGAGGTAGGCGTCAACAGCGGCGGCAGTGGCAACTTGCAGCGTCGGTTGGAGGTGGCCCGCTCGAAGATCAACGTCAACGGGGTGACGTATTACAAATGCCGCATCTGCCCGAAGGCCCTGTCGACCTCTTACAACTACTTTGCGCATAAGCGCATACACACGCGCGAGAAGCTTTTTACGTGCGACATATGCAACAAGAGCTTCACCGTCACCTCGTCGCTCACGCGCCACGTGCGCGACGTCCACGACAAGATCAAGGACTACAATTGCAGCTTTTGCGATCGTAAGCTCGCCTCAAAAATCGCACGCGACGAGCATCAAAGGACCCACACGAACGAGCGGCCCCATATATGCAACACCTGCGGAAAAAGCTTCAGACAGCGAGCTTCGCTCTCCGTCCACAAAAGGTTCCACTCCAACAACTTCTCCTTCAGGTGCAAGCAGTGCGATAGGGCCTTTCCCCGCAAGCAGGACATGGAGAGACACGAGCTCACGCACACCGACCAGAAGCCATACGGTTGCAAAGTCTGTGGCAAGACTTTCAGAAGTTCGGCCTCGGCGATCAGACACAGGCAGACTCATGACGATTCCAGCAAATACATATGTGATGTATGCGGCGATAGCTTCAATCAAGAGAGATACATGAAGAGCCATAAAACCAAAGTGCACAGAGACGACTGA
- Protein Sequence
- MESVNSGNVELVIKTVGSNGIVIQDTKEINEKGEELETTEYFLDVDEQATEEENEDAQFVPVDDDCEESHEAQYVEMEVEDSGRIILQDKDIILWNKLCRICANNSERLIPIFSGEGVEHNLCNKIHSYLPLRVSENDSLPIQVCYNCAATLLAWHEMSKGCLDAQQRLMDLQTKFNLKDQYYNDSTTEQENIQAILEVEATNGEESQVQSRCENNIQEVQVADVSESDRSRRFQTSFIESLDKQNVSKEPIKEINSIPSEKVDTSEGNCWMTVADFAKSSPQSADSPNCISLNMDSEIVANETVSVRSNAFKKNSKKCKKKNLGNQKNSSESLVCGDCGRLFKVKDSLMRHLRIHRNERPFTCHVCGKQFRDSGGLCRHLRDVHVGLKNHTCETCGKSFASKATKDDHQRTHTGERPYICDTCGKGFKSKASLYTHSKTHTDEFPHPCLHCEKKFRRKQELLCHVSMHTGEKNFECDVCFRRFRLKTELRRHALVHSDDKPFVCNVCGFRCRQKRYLNNHVKCVNLEDDDVIAILMTSTSLKSRKKRKSKDQLSTAVKQSRSRGRSKSKGEVGVNSGGSGNLQRRLEVARSKINVNGVTYYKCRICPKALSTSYNYFAHKRIHTREKLFTCDICNKSFTVTSSLTRHVRDVHDKIKDYNCSFCDRKLASKIARDEHQRTHTNERPHICNTCGKSFRQRASLSVHKRFHSNNFSFRCKQCDRAFPRKQDMERHELTHTDQKPYGCKVCGKTFRSSASAIRHRQTHDDSSKYICDVCGDSFNQERYMKSHKTKVHRDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -