Wpum044035.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- -
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000136.1:1847949-1860866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00038 0.098 14.6 2.1 1 23 361 384 361 384 0.95 2 18 0.095 24 7.1 1.3 2 23 429 450 429 450 0.94 3 18 0.0012 0.32 13.0 0.9 2 23 509 530 508 530 0.97 4 18 8e-05 0.02 16.8 1.9 2 23 583 604 582 604 0.96 5 18 0.00087 0.22 13.5 8.2 1 23 609 631 609 631 0.95 6 18 0.0032 0.82 11.7 0.3 1 20 638 657 638 662 0.92 7 18 0.00056 0.14 14.1 2.8 1 23 915 937 915 937 0.97 8 18 0.0087 2.2 10.3 4.0 1 23 982 1004 982 1004 0.91 9 18 0.00017 0.043 15.7 0.7 1 20 1009 1028 1009 1030 0.94 10 18 0.064 16 7.6 0.3 2 23 1041 1062 1041 1062 0.97 11 18 1.3e-05 0.0033 19.2 0.7 2 23 1100 1121 1099 1121 0.97 12 18 2.6e-05 0.0067 18.3 1.6 1 23 1126 1148 1126 1148 0.95 13 18 4.8e-05 0.012 17.5 1.9 1 23 1154 1176 1154 1176 0.98 14 18 4.6e-06 0.0012 20.6 0.4 1 23 1192 1214 1192 1214 0.95 15 18 3.8e-07 9.6e-05 24.1 0.6 1 23 1220 1242 1220 1242 0.99 16 18 1.8e-05 0.0046 18.8 0.2 1 23 1248 1270 1248 1270 0.98 17 18 0.00015 0.039 15.9 4.1 1 23 1276 1298 1276 1298 0.96 18 18 0.011 2.7 10.1 0.4 1 20 1304 1323 1304 1325 0.89
Sequence Information
- Coding Sequence
- ATGGACGCTGTCCAAATAAATACGTCGGAGAATTCGCGGCTACGAACGTCAAACGAGAACGACGTCGGCATGGTACCGCAGCACCAAGTAGAAATATGTCGCGTCTGCCTACTCGGTAATTCCATGATGCGAAGTCTTTTTCAAGTGGAAGGTGTTTTATCCCTATCCGATAAGGCTATGAGTCTTACGAGTGTTAAGATGTTGCATGGAGATGGTTTGCCTTCTCATATCTGTTGTGACTGCAGCGAGAAGCTTGAATTAGCATATAAGTTTAAGTTACAAGTAGAACAGGCAGATAGTGTATTACATGAGAGATTAGACTCGTTAAATATAAAGGAAGAACTTTTTTTTAGCGGTGTAGATGTTAACTTATCAACTCATAGACAACATATTGGAGTAATAACAGAGGAGAGTTTACTTTTGAAAGATCACATGGATTTATTAAATGTTCAAAAAATAAATGAGGGAGATGATGATTTGCAAAGTGATAATGTACAAAAACAAACAAACAACGTTGTTACTGATCAATGCCAAGTTGAGAAGCCTAGAAATGAAGAAGAGAATCAACATTTAAGCCAAGATAAAGAGAAAATGAAAATTATTCAGAATCAAGATTTGCAAGACATTAATAATGATCAACAGATTCATAATCAAGAAAATCAACTACAGAAGATATCAAATGAGCAGCAGAATCACTCGTTTGGAGCACATGTACTACAAGAAATAATGCTTCATGAAATTAATGATCAAGAAAGAATGCAAGAATTGAACCAACCTCATCAGCTGACAATGTATGAGCATAATTATGTAGCAGAATCACAACCATGTGATATTACAAATGCAAATCATGCATTGAAATCCGAGGAAGTAGAACGGAACAATAAAGAAGGTGAACGAAACCAGCAAATTTATAATATAACAGAAGAATCCTTATCGATTGAGCCGACTCGTAGAAGCAAACGAAGAATGAATCAAGAGAAAACTCTCATTGTTGAAGATTTCAACGAAGACAATTATTTTGAGAACCTAAACCTCAGCTCTAGATTAAAGGTTCAATCAGAGAAGACAAAAAAAGTTTTTTTTATATGTTATTTGTGCGATAAGCAATTTTCAACAAAGGAAGTTTTAAAGGAGCACATGCTGCACTCTCACGAAGAAGTAAGAAAAACTCTTTCTTTCGTGAACAATGTAGTAGAGAAGCCAGAAAATATACCGGAGAAGTTCGAAATCGACCCTACAAATTCACTTCCATTGAAATCACCTTCAAGTGGAAAACATCCAAACACTTGTCCACATTGTGGAAAAGAGTACCTTTATATAATATCGTATAACAAACATTTGAAGCAACATGAGAAGAGCGAGGCGAAGGAGGGCCTTATGCCACTGGAAGTTTCATTTCACGAGGACACCGATGCACTTAATTTTCAAAGCTACAGCGACAATATTTCGATGAGTTCCGATAGTGACGAAGTTGAGCCAAAAGATGAAAAGAAAATTCACGAGAATAAGAAACGTAATACTATAAAGTGCAATACTTGTGAGGAAGAATTTGAGACAATAAACAATTTAAGAAATCATCGGTCGAAGCACGTTATCGATGGTATACTTACCGAGCAGGATATAAAAAGTGATATGGAACAGTTCAGCATTCAAGAAAAATCTGCCAAAAGCAAAGAGGACAGTGAAGCGGTAAGCGTGGATGGGTTAAAAAGATCATCGTCGAAGAAAGAAGAATCGAGAGATCTAAAGTGCCCTCACTGTCCGATGAGTTATGCCCACAAAAAGTCACTTGCAAGGCACGTCGAGAGCCATTCCGGTACCAAGCACGCATGCAAGCTCTGCCATCAAAGTTTTGTCAGAAAAGACCACCTGCATCGACACATCGAGCAGCACAGTGGTCGATTGAAAAATTTCAGGTGCACGGAGTGCAATAAGATTTTCGGCAACGAGTTAACTTTAAAGAGTCACGTAATAGCGACGAACCACAAGACGACCTTGAATGGAAAAGAGTACGATCCGAATAAAAGAGTTAAAAGGGTAGCCGCTAGAGCAGCGCAGAGGATCATCGACCGGATCAAAACAGACCTCAGTCTTGATGAATTTGAGGAGGACGAGCGAGAAAGGGGCAGAGAGAAGAACCTCGGTGGAATCAAAGCAGAATTTTGCGTACCAAAGAATGGCCATACGGTAAAGAATTTTCTTTTCTCTCATATTTGCACTCTTGATTTGCACTCAAAAACATCCGAGATTTGGTGCGCGGTCGCAGCAACAGCGAGAGCGTGGTCGGGGGTGAGAGAGTGGGATACGGGGAGAACGGAAGCTCATCGGGGATGGCACGATAATCGTCTACGCCGACATTTAGGTCCGGGTTGGTGCCGCCGCGTGCTGTGGCGAGGAGCTTGTAATCCCGTTAGCGGAAGTCGCGGTGGGGTGACGGAGGGTGACGTAATCTACCTTGGACGGCGGTACCTCAGGACCATTCGGCTTGTAGATGTGGCGTCAACTTATCAGCGCAGAGCTTACCGTGGACCGGCGAAAAAGACAATTCCTAAACTCTCTCTTAATTCGGGCTCGCGTTTGATTGTAATTGCGGCTATCTCTGTCGCGCTCGCTGCTCCCCTACTTGTACTTACGCTCAGATTTCCATTATCGGATACTAAGCAATATAATGAGGATCAAAATGCGCTTTTTAAAAAGAGCATCTTGCAGGCGCAAAAGAAATTTCAACGTAATTCCATGAATTTTTACTGCGCAACCTGCAATCAAAAATACGTTTCAAAACATGCTCTTACTAAACATATGGAGCAGCACGTTAAGGATGAGAATTTAATTAAACAAGAAAAGGTAAAAAATGGCGACGGGTACCGCGAGAGCCAGGAAAATGAAGATGACGACGAAGATGACGATGATTTTGAAAGCGGTCTCGACTGGCCTACTGACAGCCATGAATGCATCACTTGTAAAAAACGATACAGTACGAAAAAGTCTCTACTGCGTCATCAGTTGTTGCACGAAGAGCCAAATTTCGAGTGCGATATTTGTAATATCAAGTTTTATAGGAAGGATAAATTAAAAGCCCATTATGATAAATGCTCTGAAAAAAATCCTGATCAAGTGCGTAAGTGTAATATTTGTGGTGACAGTTTTGAAAATAACGTAATCTTGAAGGAGCACAGGATAAAGCATGTAACAGAAGGAATACTGACGGAGGAAGATCTTCGAGAAATTGAACCAAGACCGGAGGACAAAATTGAAGAAAAGGTACCACGCAAGAGACGGACAGATATTGTTGGTCTTGAATGCACGGAGTGCAATAAACGTTACACATCTAGAAAAGGATTGTTGAGGCACATACAAGTACACGAGGGAAAAAAGTATCTATGCGATATCTGCCCAAAGAAATTCTACAGACGAGAGCATTTAAAGATTCATGTAGCAAAGCACAACATGATCAAACCATATAAATGCCCTCGATGTACGAAACGGTTCATCAAGGAAGAACAATTAAACAATCACCTCACTAAGCACGATAGAAGTTTCAAAAAGGTGAAGGAAGCTGATACGTCAAAAAGATTTTTGTGCGAGATCTGTTCGAAAAGTTTCACTCAGTCTACGACCCTCATAGCGCATTTGCGGGCTCATAATGGCATTAAGCCGTATGTTTGTGAAGTCTGCTCGAGACCTTTCACAACAAATGCCTATTTAAAAATGCATATGAGGACACATACGCAGGAACGACCTTACATTTGCCAATATTGCTCTAGGGCGTTTGCCCGAGCTGATACTTTGGCCAATCATTTAACGACACATACCGGGGAGGCAAAATATCACTGTAAATATTGTCCGAAAAACTTTAGAAGACTTAAATCTCTTAAGGAGCACGTTTTTATACATACGGGACAACGTCCGTACGCCTGTCCAACGTGTGATAGAAGGTTTAACAATAATGGCAGTAGATACGCGCACAGTAAGAGATGTAAGCAGAATGCGTTACAGATTAGAGCTCCCTCATTAGGTGCACAAGTTCTTAATGCCGAGCACGAACGCGAACAACAAGAGCAAGAACAAGAACAAGAACAAGAGCTGCAGAACCAACTACAGTCTCAAAGGTTACATCAGGCTACGATTAGTCAGGCTCAGATTATTAAGCCACAGAATATCAAAACTATTACAATTGCAAGATCGGACGGTGGTCTTAGTCAACAACACGTTATGGCGCACCAGGAAATTTTAATGCCTCTAATATTACCCCTCACGGTTACCCTCACCGATGTCGGCGAAGAAGTTATTCTTCCGGAGGGGACAAAAATTTTTACCGCTTAA
- Protein Sequence
- MDAVQINTSENSRLRTSNENDVGMVPQHQVEICRVCLLGNSMMRSLFQVEGVLSLSDKAMSLTSVKMLHGDGLPSHICCDCSEKLELAYKFKLQVEQADSVLHERLDSLNIKEELFFSGVDVNLSTHRQHIGVITEESLLLKDHMDLLNVQKINEGDDDLQSDNVQKQTNNVVTDQCQVEKPRNEEENQHLSQDKEKMKIIQNQDLQDINNDQQIHNQENQLQKISNEQQNHSFGAHVLQEIMLHEINDQERMQELNQPHQLTMYEHNYVAESQPCDITNANHALKSEEVERNNKEGERNQQIYNITEESLSIEPTRRSKRRMNQEKTLIVEDFNEDNYFENLNLSSRLKVQSEKTKKVFFICYLCDKQFSTKEVLKEHMLHSHEEVRKTLSFVNNVVEKPENIPEKFEIDPTNSLPLKSPSSGKHPNTCPHCGKEYLYIISYNKHLKQHEKSEAKEGLMPLEVSFHEDTDALNFQSYSDNISMSSDSDEVEPKDEKKIHENKKRNTIKCNTCEEEFETINNLRNHRSKHVIDGILTEQDIKSDMEQFSIQEKSAKSKEDSEAVSVDGLKRSSSKKEESRDLKCPHCPMSYAHKKSLARHVESHSGTKHACKLCHQSFVRKDHLHRHIEQHSGRLKNFRCTECNKIFGNELTLKSHVIATNHKTTLNGKEYDPNKRVKRVAARAAQRIIDRIKTDLSLDEFEEDERERGREKNLGGIKAEFCVPKNGHTVKNFLFSHICTLDLHSKTSEIWCAVAATARAWSGVREWDTGRTEAHRGWHDNRLRRHLGPGWCRRVLWRGACNPVSGSRGGVTEGDVIYLGRRYLRTIRLVDVASTYQRRAYRGPAKKTIPKLSLNSGSRLIVIAAISVALAAPLLVLTLRFPLSDTKQYNEDQNALFKKSILQAQKKFQRNSMNFYCATCNQKYVSKHALTKHMEQHVKDENLIKQEKVKNGDGYRESQENEDDDEDDDDFESGLDWPTDSHECITCKKRYSTKKSLLRHQLLHEEPNFECDICNIKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNVILKEHRIKHVTEGILTEEDLREIEPRPEDKIEEKVPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLNNHLTKHDRSFKKVKEADTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTTHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNALQIRAPSLGAQVLNAEHEREQQEQEQEQEQELQNQLQSQRLHQATISQAQIIKPQNIKTITIARSDGGLSQQHVMAHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -