Wpum010552.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- bab1
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000138.1:8564753-8570795[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-06 0.022 16.0 0.0 2 38 206 241 205 247 0.88 2 4 2.9e-14 1.7e-10 41.9 0.0 1 39 255 292 255 299 0.89 3 4 0.00018 1 10.6 0.0 7 34 313 339 309 345 0.89 4 4 2.5e-12 1.4e-08 35.7 0.0 4 39 370 405 367 410 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAATCGGCAGCTACAGCGACAACTGATGACACGCAGGTCGACACCTCGTATTGCTTCAAATGGAGCAATTACCAGAGCCATTTGTCCGAGGTCGTACGCCAACTACTGGAAGAGGAATGTATGGTCGACGTGACGCTCTACGCAGGCGGCGAACGCATCCAAGCTCACCGACTTGTCTTGTGCGCTTGCAGTACTCTATTTCAAGAAATTTTGAGCCAGGTTAATGAAGAACATCCTACTATTATATTAAGCGATATATCTCCTCAAGATGTTAGGTCAATTGTTGAGTTCAGTTATAATGGAGAAGTTAGAATCCCCGTTGAGAATATTAATAATTTGTTGGATGCAGCCCATTCTTTAAAAATATGTGGCTTAATGGAGATCGAAGGTCTGGATGAGTCTGAAATACCCAATGACAAAGATGTAAGCGTTGAAGAATCATACATTATGAATGAATTAAGCAAAACAGATGAAGAAGAAATAAAAATATTTGAACGAGCAAATACTGAAAATATTAAAGAAAAGAAAAGAAGAAGCTCAGATGATGATACAGATTCTACAATCAAAAAAAGGAGACGGAGAAAGAGCGTTTGCAAAAAAGAGTATAGCGATGACATGTTAAATGCTGCTATTGCCGACATACGCGCTGGAAGTTCCTTACTAGATGCAGCGGCAAGAAATCATATTCCCAGATCTACCCTGTACATGCGTGCAAAGGTATTAGGAATACCTTTGAATCCGTCTAGGAGTGAATATACAAATGAGGATATGAAATCAGCTATAGAGGCAGTTATTGCTGGATCTAGTTTACAACAAGCTTCAGATTTATATGGAATTCCAAAAACAGTTTTATGGAGGAGAATTCAAAAAGAAGGTTGTCAAACATCCAGACACGATACGCGAAAGAATTATGGCGCTGAGAAGAGAGAAGCCGCTGTCAAGGCTTTAGCAAGAGGAGAAACACTTACAAAAGTTGCAAACGAATACAAGATTCCAAAAACAACGCTGTTTCGAGATAAGGCTCGACTGGTAGATGAAGGAAAATTGCCATCATCGTATTGGAGAAAACGTAAAACCGATACCGAAGATTTAAAACGGTCTCGCTTGGAAGAAGCAGTGGCTGCATGCAAAGATGGTAAAATGTCCCAAGCAACGGCTTCTGTAACTTATCAAATACCTAAAACCACTATATGGAGACGTCTTCAAAAAGATGTTGTTAAGAAGGACACAATGACGTCCACGAAGAAGTTACAACTGAAAAGTGAATTACCTCAAGAAAAAAGTCCAGAAATGATAAAAACAGAAGAGTTAAATGACACCGATTTTGAAGCATATTGTCCAGACGATACAGAAATGAATATAACATATATCGATGAAAGTAATATGTCAGATGATCCAGTAATAATTCTTGCAAGTGAAGATGTAAATGATCTAAATTTACCAAACAGCAGATCTTTGGTCGTTGTTCATGAAAATACCGATGAAAATTTTATATCATGTGGATTAGAATTGGATGAGAATTCAAGTTTTGTATCAAAAAGTTAA
- Protein Sequence
- MSESAATATTDDTQVDTSYCFKWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNEEHPTIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEIPNDKDVSVEESYIMNELSKTDEEEIKIFERANTENIKEKKRRSSDDDTDSTIKKRRRRKSVCKKEYSDDMLNAAIADIRAGSSLLDAAARNHIPRSTLYMRAKVLGIPLNPSRSEYTNEDMKSAIEAVIAGSSLQQASDLYGIPKTVLWRRIQKEGCQTSRHDTRKNYGAEKREAAVKALARGETLTKVANEYKIPKTTLFRDKARLVDEGKLPSSYWRKRKTDTEDLKRSRLEEAVAACKDGKMSQATASVTYQIPKTTIWRRLQKDVVKKDTMTSTKKLQLKSELPQEKSPEMIKTEELNDTDFEAYCPDDTEMNITYIDESNMSDDPVIILASEDVNDLNLPNSRSLVVVHENTDENFISCGLELDENSSFVSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464086;
- 90% Identity
- iTF_00707776;
- 80% Identity
- iTF_01524128;