Waur011867.1
Basic Information
- Insect
- Wasmannia auropunctata
- Gene Symbol
- -
- Assembly
- GCA_000956235.1
- Location
- NW:153195-157349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 1.1 9.3 0.6 6 23 281 298 278 298 0.92 2 12 0.06 4.4 7.4 0.2 1 23 303 326 303 326 0.91 3 12 2.2e-05 0.0016 18.2 0.4 1 23 338 361 338 361 0.96 4 12 0.0052 0.38 10.7 1.0 3 23 374 394 374 394 0.98 5 12 6.5e-08 4.8e-06 26.2 1.5 2 23 436 457 435 457 0.97 6 12 0.037 2.7 8.1 0.2 1 10 462 471 462 485 0.85 7 12 1.2 86 3.3 1.2 2 23 550 571 550 571 0.96 8 12 2e-05 0.0015 18.4 1.4 1 19 576 594 576 596 0.96 9 12 0.012 0.86 9.6 2.4 1 22 633 654 633 654 0.95 10 12 1.7e-05 0.0013 18.5 0.8 1 23 680 702 680 702 0.99 11 12 0.011 0.83 9.7 0.0 1 23 768 791 768 791 0.98 12 12 4.5e-07 3.3e-05 23.5 5.9 1 23 796 819 796 819 0.98
Sequence Information
- Coding Sequence
- ATGGACGGACGGGCAAGAACGGCGCGCTCCCTCCCCGCGATGAACGCGAGTCTCTACGCGGCGACGATGGGCACGGGCGACAAGTGGGACAAGGTCTGCCGGCTCTGCTCGGAGGAGAGGAACGAGATGCTGCCGATCTTCGGCGACGAGGGTCTGCAGCGCAGGGTGGCGCAGAAGTTGCGCGCCTGCCTGCCCGTGCTCGTGTACAAGACCGACCCGCTGCCGAAGCAGATCTGCCAGTTTTGCGCGGCCAGGCTGGACGACGTGTACGAGTTCCGGGAGTACTGTCTCAACGTCTTCAGGAGCATGCACGACGTGTTGCTGAGGTACAAGCAGACGGAGTCCGCCCAGATATTCCTCAACGCGATGAGGAACTCGTCGGACCCGTGCCAGGTACAGCTCTGCAAGGAGAAGTCCAGAGCACCACCGCCGCTGGTTCCTCTATCAGCCGCCCTGCCGTACGACGACTCGGCGATGCCGATCAATCAAGTCAATCAGGACCATCTCCAGAACGTCTGCATGGAAGCCCTGTCCGAGTTGCCGTGCGAGGTGGAGATCAAGGAGATGAGCACGATGGAGTCGATTTTGAGCGCCGAATCTGCCGTTTGCGAGCCGCTGAACAAGAAGCGCAAACTGTCGGAGATGTTCGGCATGGACATTCAAACGGAATCCATTCCCGACATGGAAGGGGCGAGAGCCCCTAAACCGGATTATCAGGCCAAGAAGGAGGACAAACGAACCAGTATTCTGGAACAGGTGCTGACCGGCAATCTGACGAAGAACAATCACCAGAAGCTGCAATCTAGAGCGAAGCTAACTTCGGAATGGTGGTGCGCGCCCTGCAACAATTATTACAAGACGAAGGACAGCCTGATGAAGCACATGCAATTGCACTGCCCGCGTATATATACTTGTAGAAAGTGCTCCGCGTCCTTCGACTCCGTCGAGGTCTTGGCGAGACACGAGGCCAACAGTCATTTGAAGGTCAAGCTGGACTTCACGGAAAACTTATACGATTGTGATCAGTGCGACCGGCAGTTCGTAAGCTGGGAAATGCTCAAGCAGCACAGGCTGCGCGATCATGTAGCCGAATTGACCGAGATCGGAAGTAACACGTGGTGTTCATTATGCAATAGATTCTTCCCTAAGCTAGAATCTTATCAAAAACACGTTCAGTTGCATCAAGCGTACTCGGCGGTGATGCCGAAATTGTCGAAATCTTTGGAATCCCTGATGGCGAAAACGGATGAACGAACCAGAGAGATTAAACGAGACGAACAATATTACGATAATGTGAAGCTTCTCACGTGTCCCACTTGCGGGAAGGTTTGTACCCAGCAGAGCGCACTGTCGAATCACATGCGCACTCACGAACCGAAGAAGCACAAGTGCGACATTTGCGGCCGGTCATTCGGACTTTTTATACGCCTTGCGGGACACAAAATAGCCGAGCACAATGAATCGCCAGTCTTGTCGGCAGTCGAGCAAGAGGAGGCCTTGAACGCCGAGAGGGAGGCGAGGGAAGCGAGAGACGCTATGACCCGCGGTACCAAGAAATCCTACTCCGAGATAATGGAGAAGAACGATGTCCCGATAGACGACGAATCCCTGGCGAAACACATTTCCGGTGGGAACAAAAACGTGGCGAGATGCGGCATTTGCTTGCAATGGTTCAGCGATCACACGACAATGTTAACGCATCTCGAAACACACGAAAATTATTGCCACAAATGtagtatatgtaaaaaaacgtttaaggAACAGTCGCAGCTCTTGAAGCACGAGGCTTGTCATAAACGCCTAACGCTCGATAACGCCTCACTGTACACGTCCGCTGTTAGCAACAAATCATTCATGGATATGACGCATCAAAAGACGCACACGGTGGATAAAACCTATCACTGTGCGAAgtgtaataaaatctttttcaaaGAAGTCTCGCTACTCGCCCACCAATGCACGGGCGGAGCACTGTTCGGAAAGAAAGCCGCCGTGAAGTCTCGGCAGAAGACGTCGCCCTACGTCAGCAACAAGACGTACCAGTGCTCCAAATGTGACGCGACTTTCGCGAGCTCGCAGTCACGAAACGCCCACATGAAAATGCATGCCGAGTACATGCGCGGTAATACGGCGCAGACACACGAGATTAAAGTAGCCAAAGCGGACGACGAATTGATGCCAAAATTACAACCGGAGGCACTGCTGGAATACACCGTATCTCCGATCGAGCCAAAGGTTGAAATCAACGAGCAGAGTACACCTCCGCCTCTCAAACGGACCCTCATTAAAACTTCTAGCGGatatcgGTGCGGTGTGTGCCAATCACCGTTCGTGTCGAGGGAGCTAGCCGTAGCGCATTTGAGATCTGCACACCCCGTGATGCCATATCAGTGCCCTTATTGTAAGAAACGCTTCACGACGCAGTACACGTTTACTCATCATATCAAGACAGAGCATCCCGACGAGCCCGAGAAATGA
- Protein Sequence
- MDGRARTARSLPAMNASLYAATMGTGDKWDKVCRLCSEERNEMLPIFGDEGLQRRVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLNVFRSMHDVLLRYKQTESAQIFLNAMRNSSDPCQVQLCKEKSRAPPPLVPLSAALPYDDSAMPINQVNQDHLQNVCMEALSELPCEVEIKEMSTMESILSAESAVCEPLNKKRKLSEMFGMDIQTESIPDMEGARAPKPDYQAKKEDKRTSILEQVLTGNLTKNNHQKLQSRAKLTSEWWCAPCNNYYKTKDSLMKHMQLHCPRIYTCRKCSASFDSVEVLARHEANSHLKVKLDFTENLYDCDQCDRQFVSWEMLKQHRLRDHVAELTEIGSNTWCSLCNRFFPKLESYQKHVQLHQAYSAVMPKLSKSLESLMAKTDERTREIKRDEQYYDNVKLLTCPTCGKVCTQQSALSNHMRTHEPKKHKCDICGRSFGLFIRLAGHKIAEHNESPVLSAVEQEEALNAEREAREARDAMTRGTKKSYSEIMEKNDVPIDDESLAKHISGGNKNVARCGICLQWFSDHTTMLTHLETHENYCHKCSICKKTFKEQSQLLKHEACHKRLTLDNASLYTSAVSNKSFMDMTHQKTHTVDKTYHCAKCNKIFFKEVSLLAHQCTGGALFGKKAAVKSRQKTSPYVSNKTYQCSKCDATFASSQSRNAHMKMHAEYMRGNTAQTHEIKVAKADDELMPKLQPEALLEYTVSPIEPKVEINEQSTPPPLKRTLIKTSSGYRCGVCQSPFVSRELAVAHLRSAHPVMPYQCPYCKKRFTTQYTFTHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126946;
- 90% Identity
- -
- 80% Identity
- -