Basic Information

Insect: Wasmannia auropunctata
Gene Symbol: -
Assembly: GCA_000956235.1
Location: NW:506421-511344[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-05 0.0014 18.4 0.3 1 23 85 108 85 108 0.98

2 8 0.0016 0.12 12.4 0.7 1 23 124 146 124 146 0.97

3 8 1.1e-05 0.00082 19.1 1.1 1 23 182 204 182 204 0.97

4 8 0.0029 0.21 11.5 3.2 1 23 213 235 213 235 0.98

5 8 2.9e-05 0.0022 17.8 0.4 1 23 287 309 287 309 0.97

6 8 2.7e-06 0.0002 21.1 0.8 2 23 315 336 314 336 0.97

7 8 2e-07 1.4e-05 24.7 0.7 1 23 342 364 342 364 0.95

8 8 8.8e-05 0.0064 16.3 1.0 1 23 370 392 370 392 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-05	0.0014	18.4	0.3	1	23	85	108	85	108	0.98
2	8	0.0016	0.12	12.4	0.7	1	23	124	146	124	146	0.97
3	8	1.1e-05	0.00082	19.1	1.1	1	23	182	204	182	204	0.97
4	8	0.0029	0.21	11.5	3.2	1	23	213	235	213	235	0.98
5	8	2.9e-05	0.0022	17.8	0.4	1	23	287	309	287	309	0.97
6	8	2.7e-06	0.0002	21.1	0.8	2	23	315	336	314	336	0.97
7	8	2e-07	1.4e-05	24.7	0.7	1	23	342	364	342	364	0.95
8	8	8.8e-05	0.0064	16.3	1.0	1	23	370	392	370	392	0.98

Sequence Information

Coding Sequence: ATGTCCTTGGGTTTTGTCAATTTCAGGGAAGGAGGAGAGACCTTCGGCGGATTGTCGGGGATGCTGCGTCAGATTCTCTCGCCCTCGCCCGAGATCGGCGAGGTCGGTATGTCCGTCAATTGTAATCTCCTACAAACCAACTCGATATTCTCGAACCAACCTTCGTCGATGCTAACGTCGACGTTACTCCCCCCGCATTTCCCGTCCGTCTGTCAGGACCAGTCGCTGCTCGATCAGGTGCAGATCTTTACCTATCCCTGCTCCACGTGCGGGCTGGAGTTCCGAAGCGTCGTTAAGCTGAATTACCACATACGAACGAGTCATACCGCGCGTCCGGAATACGAGCACGGTATCGAGAATCAGCCGCGTTACTCGTGCGCGGTCTGCTCGCGGACCTTCGTCGCCCTGAATCACCTGAGGATGCACGAGGTCACGCATTCCGCGCCCGTGCCCACGTGCGCGTCGACCTCGGCCAGTCTCGTCACTTTGcccggtggcggcggcggcggcggtggtggtggtggcggtaaCATGGAAAAAACGTTCGCCTGCGATCTCTGTCAGGCCACCTTTCGGTATCGCACGCTACTGGAACGTCACCGGAGGATGCACCAGGAGATCGGCCAGGAGAAACCCTACTCCTGCCCGAGATGTCTGATGCGCTTCGAGACGCGCAACTTGTACAATCACCACGCGAAAACCCACAGACCTTTGCCGGCGAGTAATGACAATCGGATAGTCGCGGGTACTAACGCGGTGTCGTCGCCCGTCGATACGATGGTAGCTGGCAATCTCGGTGTTGCCggaggcggcggcgtcggcggcggtCCGGTGATCCCCGCCAAGTCCATACCTTCTTACCCCTGCGATTCGTGCTCCAAGCAATTCACGACCGCTGAATCACTGACCACGCATAAGGCGGTGCACAGGTCGCGACCACTGGTCTGCGACGTGTGCGGCAAGGGCTTCACGCATCGCAAGTATTATGTGGTGCATCAGCGCATCCACACCGGTGAGAGACCGTATCTCTGTGCCATGTGCGGCAAATCGTTCACGCAGGCGTCGACGCTCACCGTGCACCGACGTTATCATACGGGAGAGCGTCCATACACCTGCACGCTGTGCGGAAAGGGATTTGTCACGCGAACGATTATGCTTAATCACATGAAGAAGCACTGA
Protein Sequence: MSLGFVNFREGGETFGGLSGMLRQILSPSPEIGEVGMSVNCNLLQTNSIFSNQPSSMLTSTLLPPHFPSVCQDQSLLDQVQIFTYPCSTCGLEFRSVVKLNYHIRTSHTARPEYEHGIENQPRYSCAVCSRTFVALNHLRMHEVTHSAPVPTCASTSASLVTLPGGGGGGGGGGGGNMEKTFACDLCQATFRYRTLLERHRRMHQEIGQEKPYSCPRCLMRFETRNLYNHHAKTHRPLPASNDNRIVAGTNAVSSPVDTMVAGNLGVAGGGGVGGGPVIPAKSIPSYPCDSCSKQFTTAESLTTHKAVHRSRPLVCDVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTLCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01099420;
90% Identity: -
80% Identity: -