Waur010832.1
Basic Information
- Insect
- Wasmannia auropunctata
- Gene Symbol
- -
- Assembly
- GCA_000956235.1
- Location
- NW:216172-220820[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.025 1.8 8.6 0.2 3 23 460 482 459 482 0.94 2 10 0.0015 0.11 12.5 1.4 1 23 488 512 488 512 0.98 3 10 0.00014 0.01 15.7 0.2 1 23 518 542 518 542 0.97 4 10 8.2e-05 0.006 16.4 0.1 3 23 550 572 548 572 0.93 5 10 4.2e-05 0.0031 17.3 1.7 1 23 579 603 579 603 0.97 6 10 6.4e-05 0.0047 16.8 0.6 2 23 611 634 610 634 0.95 7 10 3e-06 0.00022 20.9 2.0 1 23 640 664 640 664 0.98 8 10 3.2e-06 0.00023 20.9 0.5 1 23 670 694 670 694 0.97 9 10 0.00029 0.021 14.7 1.6 1 23 700 722 700 722 0.99 10 10 0.0087 0.64 10.0 0.2 1 23 801 826 801 826 0.97
Sequence Information
- Coding Sequence
- ATGTCGTGCAGAGGAGCCGCcgatgccgccgccgcctgcACGTCGAGACGACGAGACAGCCGCGAGAGGATTAGCTCCTCCGAGGGCGAGGGAGCGGAATGCACGCACGTCGACGCGCTTCTCGCCCCGTCGAGGGAGGCGGAGGAGGTCGGTAAGAGGGACCGGCGAACGAGGCGAAATGAGAGCTGGCACCAGACGGTGACTGGGAAGGGCGTGGTTGACGTCGTCGAGACGGTGGCCGACTTCGAGAAGTGGCTCAAGATGCGCAGCACGGAGCCGCCGGTGCCATCCGGCATGGACTTGGACGCGGCCAAGATGGTGGAGGGCGTGGATCGGTATCTGGGCGAGGAGGTGCTGTCGCACGGCTGCTACCTGAGCAAAGACCCGTACGGCCTGTCCATCGACATAGACCTGGCCGACACCAAGAAGCTCAATCTGTCGTCGAGCTACGATCCGATACTGCAGGATTTGGCGCACGGCGAGGGCCACCGGTTGCTGGAGCCGCCGTGCGAGAAGGTCGTCGACGAGTTCATGCTGCCGGAGTTTCAACTGGATCATCTGGATCCTCTGGTGGCGCTCACGCCGGACGACATGATGGTGGCCGGTGAGATTCTACCGTCCGCGAGCAGTCAGCCGACGATGATCGCGGGGAGGGATCAGGACGTCGAGCAAAACGCCCCCGCGAAAACAGGTGTTGCTCCAACGCAAAGCAGCGAGGCGCCCTGCGAGAAATCCACGCAGGCCACCCTCGGTCAGCTACCGGTGAATTTGGTCGTGAATGAAATGGAGGAGGACACAAAGGCGGAACAGGAAACTGCAGGTATACAACAACCTTTGTCGGAGCACCTCGTCGGCTCCGCCGCCCTACCGCCGATGGAGGAGAACTCGTCGAGCGCAATGCCGAATTCTATAGAAATGGACACGCGAGATATGATAATAGAACAACTGAAGAAAACGAAACTTGAACCTCGTATCATCAAGAAACGCCGGCAGATGACGGAGCGACTGGAGAAGAGGCTCGACAAGCACATCAACGGCAAGAGCTTCGCCGTCGACGCGGACTCGCAGGACGGCATGATGGCGGTGGTTGCTATATCTACCGACAAAATTTCCAACATGACGCAGATCGTTATCAATACCGGTACGGAGAAACAGATCTATCAAGGCAAAACTTCGGAATTGATTGAAGCGACAGGCAACTTCCCAAAATTACCCAAGATAGACACCTCGGCCGCAGTTTGGAATGGCACAGCTGGCACCGATAACAATCCGAGCAGTCAATATGAAATCGTTATATCCAATGCGCTGGAGGAATTGGGCATCACCGACGATAGCCTGCAGCCTTTATGCGCCACCGAGCACGACAAGGTGTGGCTCTGTCCACGAGACGGCTGCAACAGACAATTCGGCAGATTGTACACTTTGAAGGGTCATTTATTAGCTCACTATGGAGTTAGACCGTTTaagtgCGATTTCGAGGGCTGCACTTGGGCCTTTTATTCCGAGTTCAAGCTAAAAAGACACAAGGAGACGCATCTGAAGCGCAAGGATTACGTGTGCGAGGTGGAAGGCTGCAATCGTCGTTTCACTACCGTCTACAATCTGTGGAGTCACGCGAAGTTGCACAATCGTCCCAATCGGATCGTTTGTCAGGTGCCAGACTGTGGCGAGAAGTTTCAAACGAAACGGGCATTGGAGCTGCACATGAAATCGCACGACCAACGGCACGCGCCTTACGTGTGCCAGCACGAGGGCTGCGGCAAACGTTATTACAGTAGCAACGCATTGACGTCGCATCAGCGATCGCACAGCTACAAGGAAGTGGACATCAAGTGCTCGTGGCCGGGCTGTGGCAAGATTTTCGACAAACCATGCCGACTCAAGGCTCACATGCGCTCTCACACCGGCTACAAGCCCTACCCCTGTACCTTCCAGGATTGCAAGTGGGCCTTCTCGTCGTCCAGTAAGCTCAAGCGCCACCAGAAGAAGCACACGAACGAGCGCAAATTCGTGTGCGACGTGCCGGACTGCGGCAAGGCATTTATGCGCTCGGAGCATTTGAAGGAGCACCGACTGACGCATGCGGAGGGTCGCTTTTTCCAGTGCTTCATGTGCACCGCCCGGTTCTCCGCCAAGAGCAGTTTGTACGTGCACATCAAGAAACATCAGCAGACGAAGTCGGATTTGAACGTAGCCAACGATACGCCCGAGTGCACTTCCGGCGATCACGCAAAACGCACGAGGGCAAGAGAATCTCATTACCCGCGAGTGAAGTCGATCAACAAGTCGAAGCGATGGAACGCCGAATTGATGATGAACGCCGCGGAGACTGCCGCGAAGGAGGGCAACGTCGAGAGGCAGATCGTCGGCGCGTGTTCCCAGGATCAAATGGAGTGGGTGTACCGTTGCCCGATAGATATATGCGGGCATTTGATCAACAACGAGACGAGTCTTCGCGAGCACATGTTGAAAGTGCACGACATACATTGCGACGATTTGTTGGCTAAACCGTCCTCGGACGATGCCAACATAGATTACATTTTGTACACCGTGCACGGTTCGCCCCCAAGTTCACCCACTGCTGTCGAAGAGGAACAGATGGTCATGGTGACTCCGTGTGACGCCGTCATCCTCGATACCTCCTCACCAAGGACGGATCATTGTCTGCCGGAACCGGACCCGCCACCTCTCAACACCCTGCCGAAGAGCTCGGAAACGTTCCGGAACGACGCGCGAGCCGACAAGCGGATCGTCGACAACAAAGCGATATCGGTGAAGGAGCAGGGCTCGGCAAGGACAGATCTAACATATTCCGATTGGTCTAAATCGAAGAGGAACGGTGCACTGATGAATTCGACCGTAACGGAAACGTCGGACGTTGTGTTGGGCGCGAGTGACGACCTGAGCGAGGGTCTGTTGTTTACAGAGGAACTGCCGTCGATGTATTATCAGGACGATGTCGCAGGTACGGAATACCAGGTGCTGTTATTAGACTCAAGTCCGCTCGAAAGTGCCAGTAATTTGCGCGGTCTCGAGTGA
- Protein Sequence
- MSCRGAADAAAACTSRRRDSRERISSSEGEGAECTHVDALLAPSREAEEVGKRDRRTRRNESWHQTVTGKGVVDVVETVADFEKWLKMRSTEPPVPSGMDLDAAKMVEGVDRYLGEEVLSHGCYLSKDPYGLSIDIDLADTKKLNLSSSYDPILQDLAHGEGHRLLEPPCEKVVDEFMLPEFQLDHLDPLVALTPDDMMVAGEILPSASSQPTMIAGRDQDVEQNAPAKTGVAPTQSSEAPCEKSTQATLGQLPVNLVVNEMEEDTKAEQETAGIQQPLSEHLVGSAALPPMEENSSSAMPNSIEMDTRDMIIEQLKKTKLEPRIIKKRRQMTERLEKRLDKHINGKSFAVDADSQDGMMAVVAISTDKISNMTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSAAVWNGTAGTDNNPSSQYEIVISNALEELGITDDSLQPLCATEHDKVWLCPRDGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHAKLHNRPNRIVCQVPDCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKIFDKPCRLKAHMRSHTGYKPYPCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDVPDCGKAFMRSEHLKEHRLTHAEGRFFQCFMCTARFSAKSSLYVHIKKHQQTKSDLNVANDTPECTSGDHAKRTRARESHYPRVKSINKSKRWNAELMMNAAETAAKEGNVERQIVGACSQDQMEWVYRCPIDICGHLINNETSLREHMLKVHDIHCDDLLAKPSSDDANIDYILYTVHGSPPSSPTAVEEEQMVMVTPCDAVILDTSSPRTDHCLPEPDPPPLNTLPKSSETFRNDARADKRIVDNKAISVKEQGSARTDLTYSDWSKSKRNGALMNSTVTETSDVVLGASDDLSEGLLFTEELPSMYYQDDVAGTEYQVLLLDSSPLESASNLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128451;
- 90% Identity
- -
- 80% Identity
- -