Waur008874.1
Basic Information
- Insect
- Wasmannia auropunctata
- Gene Symbol
- -
- Assembly
- GCA_000956235.1
- Location
- NW:1377526-1384180[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.072 5.3 7.2 0.4 6 21 12 27 6 28 0.86 2 14 4.7 3.4e+02 1.4 0.3 2 22 34 54 33 57 0.87 3 14 2.4 1.8e+02 2.3 0.3 1 12 241 252 241 261 0.88 4 14 0.016 1.2 9.2 1.9 1 20 376 395 376 397 0.95 5 14 5.1e-05 0.0038 17.1 0.1 2 23 402 423 402 423 0.97 6 14 0.0012 0.087 12.8 5.6 1 23 434 456 434 456 0.97 7 14 0.012 0.9 9.6 0.3 1 23 475 496 475 496 0.81 8 14 0.00049 0.036 14.0 0.1 2 23 502 523 501 523 0.95 9 14 3.5e-05 0.0026 17.6 4.8 1 23 588 610 588 610 0.99 10 14 1.5e-06 0.00011 21.9 3.7 1 23 616 638 616 638 0.96 11 14 0.00018 0.013 15.4 4.1 1 23 644 666 644 666 0.97 12 14 1.1e-06 7.8e-05 22.4 0.8 1 23 672 694 672 694 0.98 13 14 2.2e-05 0.0016 18.2 0.2 1 23 698 720 698 720 0.99 14 14 0.00052 0.038 13.9 0.2 1 23 728 750 728 750 0.97
Sequence Information
- Coding Sequence
- ATGGGCACGCTAAACCTCATCTGCCCCATGTGCTGCGGCGAGACCTTCAACAACACCCAGTCCCTCAAGTACCACCTGCTAAGCCTGACAGACAATCTCTACTGTCCGAGCTGTTCGCAGCGTTCCGACTCCGTCATGGCGCTCATTCAGCACCTGGACATGTGCGAGCACGACTTGAGGTACCGGGTGAAGTCCGACATCCTGGCGGACAAGTTCAGGAAGGGCGGAAAGGAGCCCGAGATCAAGATGGATCTGCTGCTGGACGTTAAGACGCAGCAGCTCAATCGCGGCTTCCTCGCGACTATGGGCAACAACGGAGTGGTCATAATGGGCGATTCGCAGACGATACAATTGGATGAGAATGGAGAGATTAAAGTCGTAGAAAAGATGGACACGGAAGAAACGCAACCAGATCAAAATTCTCTGGATTTCAAGATGCCCGAAGGGCTCGTCGGCGACGTCGGCGGCGGTGCGCAAAGAAGGCTGCAGCTGCAGCCGTCGCAGGGCTTGATGGCTATCCCGATATCGAACGCGGACCGCAAGGCGGCGTTGATGGAGAAGAACATAATCGCCGTGCTGCCGGACAGCTCCGAGCTCCTGGACGGCGAGACCACCGCCACCCTGATCGACGTGGATCGTATAAATGAGGCGGAGGAGCTCGACGAGGTTGATCTGCTGCGGGTCAAGCGAGAGCTGTGCGAgTTCGAGTCCGACGCCGTGTACAGTTGCACTAGCTGCGAGATGAGCTTCAACTCCGTTCTGGAGCACATCAAGCAGTTCCACGACGGGCAGGAGGTGCTGCTGGAGATGGCGGAGCAAATGAACGACCTGGCGACGACGAGCCCGGTGTCCGCGATGTCCGACGGCTCGGAAAGTCTGGCGGGCAACAACAACGCGAGGCAGCGGCAGACGATGAACACGCTGCGCACGGAGGAGTGCGTGGACAACGAGGGTAGGCTCTACACCCGGAAGGTGGTGCAAATCGAGAGATTCTGGGACCGCACGCCGATTCAGGTCACAACGACGCAGTCGCCGAAGGCGCCGATGATCGAGAAGTTCTTTTCGAACGTGGAGGGTGTCAAGGTACGAGAGAAACGCCTGGCGACCGCGTCGACCGCGCCAAAGTACAAGTGCAATCAGTGCCTGCAGCAGTTCTCCAAGTTGGGAAACTTCCGCGTGCACGCCTGCCTCCGTGGCAGTAACCGTTGCGAGCAGTGCGACCAGAGCTTCGCGACCCCCAGGGCGTTGCAACTTCACGCGAAGGTGCACGACAGCGAGGCCGATCCGAGCCAGAAGACGTTTATCTGCACCACGTGCGGCACCGAGTTCTGCTCCCACAAGAGCCTACGGCTGCACTCGCGGATGCACGCGCCGGTGAGGGCCAGACACGTCGAGGCACCCGAGGGCACGCCTAACGCAACTTTTACCTGTCCCGAATGCGGCAAAACGCTGTCCGAGTCGTACAAAGACGCGCACATGACGCTGCACACGGGCGATTCGGTGACGTGCACCGTTTGCAACCGGAAGTTCGATTCCGCGGACAGTCTGGCGATGCACGCGGCGGTGCACGTCGAGCTGGCGCCCTCGCAGTCGCCCACACCGCAGGTTTCGTCCTCAACCGTCGTGGAGGCAACGACGACATCGGCGACGACGCCAGCGACGGTGACGCCTGCGACGATCGCCATGACGTCCACAACAAcggtgacgacgacggcgacgacgacggtgtcAACGGCGGAACCCGGCGACAGCCAGAAACCGTATCAGTGCCAGCATTGCGGGCGCAGGTTCACCAGACCGCACGAGAAAGTCAAGCACGAACGAATTCACACCGGGGAGAAGCCGCATGCTTGTGAGGTATGCGGCAAGACCTTTCGCGTGTCCTACTGCCTGACCCTCCACATGCGCACGCACACAGGCGTGCGGCCGTACGCCTGTCAGCACTGCGGCAAGCGCTTCAAGGCGTCCTCCGTCTACAACCATCACCTGCTGACGCACGGCGACGAGCGCGCCTACACGTGCCCGTACTGCCCGAAGACGTTCAAGACGCGGGTGCAGCTGGCCGGCCACAAGAACAGCCACACGAAGCCGTTCCGGTGCACCGAGTGCTCGCGACCGTTCGCGTCGCTCTACGCCGTCCGCGCGCACATCCAGACGCACAAGAAGGACAACAATCTCAAGTTCAGCTGCTACGTGTGCGGCGCGTCGTACGGTCGGGCGTTCGCCCTCAAGGACCACCTGAAGCAGCACGGAAACCAGGACGTGCTCGCGCTGCCGGAGCCGGCGCGCGAGGAGGAAGTGCACGAGAACTTCCTCCTCGGCGAGGAGGAGGTCGAGGAGGACGAGTTCGCggccccgccgccgccgccaccactgCCGCCACTGCCACCACCGTCGTCGCTTCCCGTCGTCGCGTACCCCCCCGGCGTGAACGACACCGACTGA
- Protein Sequence
- MGTLNLICPMCCGETFNNTQSLKYHLLSLTDNLYCPSCSQRSDSVMALIQHLDMCEHDLRYRVKSDILADKFRKGGKEPEIKMDLLLDVKTQQLNRGFLATMGNNGVVIMGDSQTIQLDENGEIKVVEKMDTEETQPDQNSLDFKMPEGLVGDVGGGAQRRLQLQPSQGLMAIPISNADRKAALMEKNIIAVLPDSSELLDGETTATLIDVDRINEAEELDEVDLLRVKRELCEFESDAVYSCTSCEMSFNSVLEHIKQFHDGQEVLLEMAEQMNDLATTSPVSAMSDGSESLAGNNNARQRQTMNTLRTEECVDNEGRLYTRKVVQIERFWDRTPIQVTTTQSPKAPMIEKFFSNVEGVKVREKRLATASTAPKYKCNQCLQQFSKLGNFRVHACLRGSNRCEQCDQSFATPRALQLHAKVHDSEADPSQKTFICTTCGTEFCSHKSLRLHSRMHAPVRARHVEAPEGTPNATFTCPECGKTLSESYKDAHMTLHTGDSVTCTVCNRKFDSADSLAMHAAVHVELAPSQSPTPQVSSSTVVEATTTSATTPATVTPATIAMTSTTTVTTTATTTVSTAEPGDSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHGNQDVLALPEPAREEEVHENFLLGEEEVEEDEFAAPPPPPPLPPLPPPSSLPVVAYPPGVNDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126922;
- 90% Identity
- -
- 80% Identity
- -