Waur004234.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Wasmannia auropunctata
Gene Symbol
-
Assembly
GCA_000956235.1
Location
NW:12746-16281[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 8e-06 0.00059 19.6 3.1 1 23 262 284 262 284 0.99
2 12 1 74 3.6 6.3 1 23 289 311 289 311 0.97
3 12 6.1e-05 0.0045 16.8 1.4 3 23 322 342 321 342 0.99
4 12 1.7e-05 0.0012 18.6 4.2 1 23 434 456 434 456 0.97
5 12 0.00016 0.011 15.6 1.3 1 22 461 482 461 485 0.91
6 12 2.7e-06 0.0002 21.1 0.7 1 23 524 547 524 547 0.96
7 12 1.5e-05 0.0011 18.8 2.6 1 23 580 602 580 602 0.99
8 12 0.00012 0.009 15.9 4.0 1 23 616 638 616 638 0.96
9 12 0.00012 0.0085 16.0 4.7 1 23 644 666 644 666 0.98
10 12 0.00018 0.013 15.3 1.4 1 23 672 694 672 694 0.98
11 12 3.5e-05 0.0026 17.6 6.5 1 23 700 722 700 722 0.98
12 12 0.00016 0.012 15.5 0.3 1 21 728 748 728 749 0.93

Sequence Information

Coding Sequence
ATGCAGATCGACAGCGGGATGTTGACGCGGACGAATCCGGACACCAGCCTCTGCCGCGTCTGCCTGACCGTGGACCACAACAACCAGTGCATCTTCCGCAGGAACTGGGACGACCCGGGGGACCCCTCCGAGCTGTCCGAGAAGCTGCAGCTATGCTGCGGCGTGGAGGTCCTGGAGAACGACGGCCTGCCCGCTAACATCTGCCTCGAGTGCGTGATGAAGGTCAACGTCGCGTACGAATTGAGGAAACAGTGTCAGAAAGCGGATGTGGAACTCAGGAAGCTGTACGGGAAAGCGTCGGGGACGAGCGTCGCCAGCAACTGCATTTTCAAAAAGGACCAGTGTTGTCAAACTGAGCAATCTTTTATCTCGGATGCAATCAATTCAGCGGACAATACAGAGTTAAATGCGGACGATGAGGTTAACGTAGAGAAGAATACCATGCAGGCAAATGTCATAAGACGAGAACAAATACGAGATGCTTTCGAACAAACCAAGCAGGATACTTTAATGGACAATGAGACAGATTTAGACTGCGGTAGTAGATACAAACAAGTGGAACCTGACAAGGTAGCTAAGAAGGATCTTTATAGAACGAGGAGATTGACTATGTTCAAACGGGTCACGTCTATAGAAAATTTGAGGAATTACAAAGAGAGGCAGAGACGGTATATCAAGAAGAGCGTGAGCGTGAAACGCGAGAGCAGCGACGGCGAGTATCAGACGAAGGCGAGAGGTGTCCGCGGCAGGATGGACCGAGGAGCGTCCGAGCTCGAATTACAATACAAGTGTCCGAAGTGTGATAGATTTTATTCCAGTAAAAAGTCTTTGGATCGACACACCTCGACCCACAACGACAAAGAGTTCAAATGCGACAGCTGTGATAAGCAATTCTTCTGTCTGGACAAATTACACAAGCACGTTAATCTGCACCGGGCGAAGGAGAAGTCGAAGCCGGTGCTGTGCAAGATCTGCAACAAGAGTTTCAGGAAGATCGACACCATGGTCAGGCATCTGAATACTCACAAGAAGGCGTACCCCAAGGACGTTTTCACCATACTGAAGGAGATACGGGACAAGAGGAGATTGGAGAATAATCCGGAGTCCCTCGACACGTCGCTCACGAtggacgaggacgaggagtTGGGAGCGCACGACGGACAGTCGCGAGGTGAGAACGACGGCACGACGAGGGAGCTGAGGAAACGCAACAACACGAGAGTGGAGCAGAGGGACTCGGATTTGGCGAATAGTGACTCCAGCGACGACAAAACCGAGTCGTTCGACGACGCGTCGACCTTCAACTGCAAGCACTGCAGCAAGAGTTACCGCACCGAGAGATCGCTGCAACGTCATCTGCTGGTACACGAGGAGAAGAAGTACGTCTGCAACGTGTGCAACATGAAGTTCTTCCGGCAGGACCGGCTGAAGAGCCATATGGATCGGTACGGTCACGACGAGAGCAAGGTGTGCCCGGAGCCGCAGAAGCCGCCGGACGACAAGTCGGCCATCAAGCTGATAAACACCTGGATAAGGGAGGAGCTGGATTCCGACAACGAGGGCAAGGGCTTCCCGTGTCGGATCTGCGGGAAGTCGTACGACACGAAGAAGTCCCTGCTGAAGCATCAGATGAACGCGCACGGCGGGCGGGACGAGGGCTGCGCGAGCTGCGGCGGCGTGCGCTGCAATTGCGCGTACAAGGATCCGGAGAAGAGCGGCGGCGAGAAGTCGAAGCCGTACACCTGCGAGGAGTGCAACAAGTCGTTCGAGAAGGAGATCAAGCTGCACAAGCACCTGCGGATTCACGAGCGCGCCAAGGAGCAGCAGGACGCGAACTTCAAGCGCTTCCTCTGTCACATATGCAGCAAGACGTTCCGGCAGAACACCGGCCTCATGTTCCACATGCGGACGCACACCGGCTACAAGCCGCACGTGTGCAAGTACTGCGGCCGCGGCTTCACGTCCAACTCGAACTGCATCAATCACGAGCGGACGCACACGGGCGACCGGCCGTTCGTCTGCCAGTACTGCAGCGCCGCGTTCGCCAAGTCGTGCACCCTGAAGGCACACATCACCACGCACACCGGCGAGGCGAATTACCACTGCAAGACCTGCGGCAAGTCGTTCCGCCGGCTCAAGTACTTGAAGGAGCACAGATTCACGCACACGGGCGAGAAGCCGTACGCGTGCAAGATCTGCGGCACCGCGTACAGCCATTCCGGCAGTCTGTTCGTCCACGAGAAGAAGTGCAAGGCGCAGTACAGTAATTATCAGCCGGGGATCGCGCAAAAtgcgcagcagcagcagcagcagcaacaacatcaacaacagcaacaacaacaacaacaacaacaacaacaacaacaacaggTTTCCTACGGTCAGTCCCCTCAGTCCACCGGCGGCATTTCCGTGGCGTCCACCTCTTCGATTGTCGCTCCTATCATCACCACGCTGCCGCAGGCAGCTCACTTGAACGTCATTAACAGCACTCTGAATGTACAGACGAACAAAGGTTACATGGATAACGTTCAGCGAATGAACGCGCATGCAGCGACCAACGCGACCACGGTCGTCTCGTCGGGTCTGCACCCGAATGTCGACATCTCCGAAATGAGCTCCGCCGTCAGGAACTTCTCTATCATCGGACAGATGTTTCACACTTAG
Protein Sequence
MQIDSGMLTRTNPDTSLCRVCLTVDHNNQCIFRRNWDDPGDPSELSEKLQLCCGVEVLENDGLPANICLECVMKVNVAYELRKQCQKADVELRKLYGKASGTSVASNCIFKKDQCCQTEQSFISDAINSADNTELNADDEVNVEKNTMQANVIRREQIRDAFEQTKQDTLMDNETDLDCGSRYKQVEPDKVAKKDLYRTRRLTMFKRVTSIENLRNYKERQRRYIKKSVSVKRESSDGEYQTKARGVRGRMDRGASELELQYKCPKCDRFYSSKKSLDRHTSTHNDKEFKCDSCDKQFFCLDKLHKHVNLHRAKEKSKPVLCKICNKSFRKIDTMVRHLNTHKKAYPKDVFTILKEIRDKRRLENNPESLDTSLTMDEDEELGAHDGQSRGENDGTTRELRKRNNTRVEQRDSDLANSDSSDDKTESFDDASTFNCKHCSKSYRTERSLQRHLLVHEEKKYVCNVCNMKFFRQDRLKSHMDRYGHDESKVCPEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCRICGKSYDTKKSLLKHQMNAHGGRDEGCASCGGVRCNCAYKDPEKSGGEKSKPYTCEECNKSFEKEIKLHKHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQPGIAQNAQQQQQQQQHQQQQQQQQQQQQQQQQVSYGQSPQSTGGISVASTSSIVAPIITTLPQAAHLNVINSTLNVQTNKGYMDNVQRMNAHAATNATTVVSSGLHPNVDISEMSSAVRNFSIIGQMFHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00765856;
90% Identity
-
80% Identity
-