Waur003495.1
Basic Information
- Insect
- Wasmannia auropunctata
- Gene Symbol
- -
- Assembly
- GCA_000956235.1
- Location
- NW:71711-79056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4 3e+02 1.7 0.0 1 23 199 225 199 225 0.89 2 13 0.00043 0.032 14.1 0.2 1 23 230 252 230 252 0.94 3 13 6.4e-05 0.0047 16.8 0.8 1 23 260 282 260 282 0.98 4 13 5.6e-06 0.00041 20.1 0.6 2 23 290 311 289 311 0.97 5 13 6.1e-06 0.00045 20.0 1.9 1 23 317 339 317 339 0.98 6 13 0.00016 0.011 15.5 3.7 1 23 346 368 346 368 0.99 7 13 7.1e-07 5.2e-05 22.9 1.7 1 23 374 396 374 396 0.96 8 13 5.8e-06 0.00042 20.0 0.1 1 23 402 424 402 424 0.98 9 13 4.1e-07 3e-05 23.7 1.2 1 23 430 453 430 453 0.96 10 13 4.7e-07 3.5e-05 23.5 0.6 1 23 459 482 459 482 0.96 11 13 5.3e-06 0.00039 20.2 3.1 1 23 488 510 488 510 0.99 12 13 5.3e-05 0.0039 17.0 0.4 1 23 516 538 516 538 0.94 13 13 0.00057 0.042 13.8 0.1 1 22 544 565 544 568 0.92
Sequence Information
- Coding Sequence
- ATGATGGCTGACTTCGATAAAGATTCCATACAGTGCTTAGTGTGCAACAGTAAAATTGGAATATCCACTAGAAACAGTATACGCATCTTTGATGAATCTAATTGTACTGTATCTGAGAAGCCACTTGTGGATGTTATATCAGCTGTTTTAGAAATTGATATCAGTGAAGAGTCCGTGCATTCTCATGTCATTTGTAGAAAATGTTTTAAGCTGTTCAATGAGGTGGATGAACTTGAAAGTAAATTAACCGAAATCAGAATGGAGTTATGTAACAACTATAAAAAGACAGAGGAAGTTAAAAAGTTGTGTGCCATACTACAAAATGAGGAAGAATATAACGATCATGATTACACAGACAATACGGAAAGTCAAAACACTTTAATAGAGGAACtgcaagaaaataaagattatataatagagGAGACTAAACAAGAAGAGGAAGAACAAGAAACGCCAATTGTAGAGGCAGAAGATTCTTTATTCACCGAGGAAGTAGATGATCCAGATAGTCctaatgataaaaagaaattgaagaaGAGCAAAGTTAAAGCGAATCGCCCTCAGGAAACTattgtACTTAGAGATGAATCTTCGTACACCTGTGTCTTATGTCCAAATGAGGAGAGAGTCACGGCAGATGCTAAAACTATTATAGCGCACATGAAAGACGTGCACGACGTCcgtttatatatttgcgaTGTATGCGGACAGGATTTCAGGAAGAGAAACGAACTTTCCTTGCATCTTGACGATCACGTCGCAAAGGAGGAAGGCGACTTTCAGTGCGAGATATGTAATAGGATATTTGGTAATCTGCGACTGTTCCGGATTCATAAAAGGATACATTATCCGCAAGTGAAATCATGGACTTGCGAGTCGTGTGGAAAGAGATACAAttccaaaaatttattagaagaaCACATGAATACACACACAGGTATTCGCCCGCACGTGTGCGAAACATGTGGCAAAGATTTCGCATccaagtatacatataaagcgCACGTAAAAACACATGAAGTACGACCTCGTCCATTCAAGTGCAGTCGATGTACTAAAACGTTTTTGAGCCAGCAAAATTTGACACAACATGAACGAACGCATAATGGCATAAAGGATTATGTATGCCATCAGTGCGgtAAGGCCTTTACCTCCTCACACAATTTAGAGGTACATAATATAGTGCATACCGGAGATAAACCCTTTCCATGCGGAATGTGTGGTAAAGCGTTTGCGCGTAAAGCGGAAATACGTGATCACGAGAGAACTCATACAGGTGAGAAACCTTATCAATGCGAGTTTTGTGGAGCAACATTTAGCCAGAGATCGAATCTGCAATCTCATAAGCGGGCGACGCATTATAATGATAAACGTTACAAGTGTGATGAATGTGGAAAAGGTTTCAAAAGAAGAAGATTATTGAATTACCATATAAAAGCGGCGCACACCGGTGAAAGACCATATAAATGCAATACGTGTGACGCTACATTTGTCTATCCTGAGCATTTCAAGAAgcacacacgtatacacacagGCGAGAAACCATATCTGTGTGAGGTTTGTGGCAAAGCATTTAATAGCAGAGATAATAGGAACGCTCATAGATTTATACACAGCGATAAAAAACCATACGAATGTTTGGTGTGCGGTATGGGTTTTATGAGAAAACCATTACTTTACGCACATATGCAACAAAAGGGTCATTTAAATGATACGATAGTAGTGAACCAACCGCGTCTGACAATGGACGACGATCAAATAATAACTATTCCCAATAGTAATGGCGAACTGCTGATGGAAGAAGTTGATAATGAACAGCTGGATGAAACTGAATTATATGTAACCGAACTGAAAGATCACGTGATTATACAACAAGGAGAggatcatatatataatgaagaggatgttgtattaaatataccaACAGAAGAAACCGAAGTAGAACATCTTGTCGTCGAAAACGATCAGATAAATTTTGTGGAGGGTGAAGATGCAGAATGTAAAACGGAAGTTGATGAAGTAGAAACGGTGTACACTTATGACGAGAATGAAGAAGGCGAGACGATAGTTATACCATCCTCTTCGCAAGGAGAAGAGAAGAATGTGCGATTAGTGCAGATATTTCCAGCCTCCGGAGATGGAGAAGGCAAAAACTGGTTGAGCTTAGTACAAAGCACttga
- Protein Sequence
- MMADFDKDSIQCLVCNSKIGISTRNSIRIFDESNCTVSEKPLVDVISAVLEIDISEESVHSHVICRKCFKLFNEVDELESKLTEIRMELCNNYKKTEEVKKLCAILQNEEEYNDHDYTDNTESQNTLIEELQENKDYIIEETKQEEEEQETPIVEAEDSLFTEEVDDPDSPNDKKKLKKSKVKANRPQETIVLRDESSYTCVLCPNEERVTADAKTIIAHMKDVHDVRLYICDVCGQDFRKRNELSLHLDDHVAKEEGDFQCEICNRIFGNLRLFRIHKRIHYPQVKSWTCESCGKRYNSKNLLEEHMNTHTGIRPHVCETCGKDFASKYTYKAHVKTHEVRPRPFKCSRCTKTFLSQQNLTQHERTHNGIKDYVCHQCGKAFTSSHNLEVHNIVHTGDKPFPCGMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRRRLLNYHIKAAHTGERPYKCNTCDATFVYPEHFKKHTRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQQKGHLNDTIVVNQPRLTMDDDQIITIPNSNGELLMEEVDNEQLDETELYVTELKDHVIIQQGEDHIYNEEDVVLNIPTEETEVEHLVVENDQINFVEGEDAECKTEVDEVETVYTYDENEEGETIVIPSSSQGEEKNVRLVQIFPASGDGEGKNWLSLVQST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408467;
- 90% Identity
- -
- 80% Identity
- -