Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0019 48 6.1 9.3 1 11 59 69 59 70 0.96

2 6 2.5 6.3e+04 -3.9 0.8 6 10 76 80 74 80 0.46

3 6 2e-07 0.005 18.8 10.6 2 18 87 103 87 104 0.96

4 6 0.21 5.2e+03 -0.4 1.2 6 10 133 137 131 138 0.76

5 6 4.1e-09 0.0001 24.2 10.9 1 16 175 190 175 200 0.92

6 6 6.4e-08 0.0016 20.4 10.5 1 16 207 221 207 222 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0019	48	6.1	9.3	1	11	59	69	59	70	0.96
2	6	2.5	6.3e+04	-3.9	0.8	6	10	76	80	74	80	0.46
3	6	2e-07	0.005	18.8	10.6	2	18	87	103	87	104	0.96
4	6	0.21	5.2e+03	-0.4	1.2	6	10	133	137	131	138	0.76
5	6	4.1e-09	0.0001	24.2	10.9	1	16	175	190	175	200	0.92
6	6	6.4e-08	0.0016	20.4	10.5	1	16	207	221	207	222	0.97

Coding Sequence: ATGGAACCTGTAACAAAACCCTACGTTGCGGCAAGCCGGCACATTCCCATCAGTGTGCTAGCAAATCTCATCATATCAACTGCCCACCGTGCAACAAACAAACCGCCGTCAAGTGTTGCGCGCGGCCATATGGACCAGATGATAAAATGCCGCCAGCTGTCGAAGAAGCGTTCCTGCGGCAAACACAAATGCAACCAAGAGTGCTGCATCGATATTGATCACATTTGCCCGATGTCATGTAACTATACTCTATCCTACGGCAAGCACAAGTGTGGTCAACCATGCCATAGGGGCAACTGTTCTCGTTGCTATCGCAGCTCATTCGAGGAATTGTACTGCGAATGTGGAACTGAAGTGATCTATCCGCCGGTGCCATGTGGCACAAGGAAACCGCCCTGCGAGCGCCCATGCTCTCGCCAACACCCACGCGATCATCCAGTTCAACAGTACGAACAGAGAAAAACCATTCCATGCAGCCAGGAGAGCTTCAGCTGTGGCCTGGCGTGCAACAAGCAATTGATTTGTGGTCGTCACAAGTGCATCAAATCATGTCACGAGGGTCCGTGTCAGGCGGCAGGTGAAATctgcaagcaaaattgcacaaCAATGAGACCTAATTGCGGACATAAGTGCATGTCGCCATGCCACGATGGGGACTGTCCGGAAAcagcgggcccccgcccaattatcaaggcttcgcccatcaatgacgttgtctaa
Protein Sequence: MEPVTKPYVAASRHIPISVLANLIISTAHRATNKPPSSVARGHMDQMIKCRQLSKKRSCGKHKCNQECCIDIDHICPMSCNYTLSYGKHKCGQPCHRGNCSRCYRSSFEELYCECGTEVIYPPVPCGTRKPPCERPCSRQHPRDHPVQQYEQRKTIPCSQESFSCGLACNKQLICGRHKCIKSCHEGPCQAAGEICKQNCTTMRPNCGHKCMSPCHDGDCPETAGPRPIIKASPINDVV

Sequence clustering based on sequence similarity using MMseqs2