Vzon031148.1
Basic Information
- Insect
- Volucella zonaria
- Gene Symbol
- -
- Assembly
- GCA_963966105.1
- Location
- OZ014531.1:63429160-63432452[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.9 1.4e+03 2.1 1.9 3 21 625 643 624 647 0.92 2 11 0.0037 1.3 11.6 0.5 2 21 669 688 668 689 0.92 3 11 0.15 52 6.5 1.0 1 23 709 733 709 733 0.93 4 11 0.017 5.7 9.6 0.3 1 23 738 762 738 762 0.92 5 11 0.05 17 8.0 0.5 2 23 790 811 789 811 0.97 6 11 1.5e-05 0.0052 19.1 2.0 2 23 845 867 845 867 0.95 7 11 0.0045 1.6 11.3 0.0 1 21 872 892 872 893 0.94 8 11 4.4 1.5e+03 1.9 0.2 2 23 924 945 923 945 0.90 9 11 0.0006 0.21 14.1 5.2 2 23 959 979 958 979 0.96 10 11 5e-06 0.0017 20.6 4.4 1 23 985 1008 985 1008 0.97 11 11 0.089 31 7.3 0.9 1 13 1026 1038 1026 1038 0.92
Sequence Information
- Coding Sequence
- ATGCTCGAGGAGGATCTCGATGATACACACTTGTGTATCAAGTGTAGTGCCACAATTGTTGGGCTGAATAATTACGTTCAACATCGAAAGACAAATTGTTCCAGCAAGACATCACGGAATACTATAGCTGGCAGCTACGCaggatatgaatatcaagattcGTCCAACTATGCCAAATCTGAAGTGGAGACTACCGGTGGAAAAACTTCGAAGAACATAACTGATCCATATGAGTTGCCATATGAGCCGGCCGCTGATTTATTCTTCTCCTCGTTGCAGTTGCAAAGTGTTCAGGCGAGTAGTGGTGGGAAGACAAGCTCAAATCAGCAGATTTTAACGAGAAAAGCTACTGCGACGTTGTTGTCATCTTCTGGTCGGGATGAGCCTGAAGGTGATTGGCAGGAGGAAACTCCAAATAACACGGAGAATTTGATGAAGGCCGTTCGGGATATTAGTGAAACGAAAAAATTTGAGCCAATCTTCAAGCCAATTGCATTTGGTCATGGATCTCCGGAGCCAGAGCAAagtgacgatgatgacgatgtcGATGAAGTttttgacgatgatgatgatgacgatgacgaggaCTATGTACCAACGCCGTATAGTGGGGGAAAGTGGAAGCCAGGAAGTCAACCGGCTCCTAGAAGtggtggaaaatggaaaaacaaatcaCAGCCGGCGGCAGTAATCCCAGCATCTCATACAGGTGGTAAATGGAACTTTAAAATACCAGCCAGTGAGGGAAGTAAGTGGAAGCCTTACGCTAGGAACTTACAAGCAGACACTTCTAAAGTAACACTAGACTCAACACCGTCTAATCAGTCATCCCAAATCAGCGAAAAACTAAAGTCCACTGCGGAATACCTTCCGAAAGAAACAGCAGATGATGTGCAATCTTCCGAGATTCCTGAAACTGGTGGAAAGTGGAAGCCTGGTTTTGGAAAAGTCCCTTCTGGCGCCAAATGGAAGTCCACTGAAGGCCAAGAACCATTAGAAATCCTTGAACCACAAACCGGTGGTAAATGGAAGCCGGGTGGatcgaaaacattaaaaataccACCACCATCATTCACAGGGGGTAAGTGGAAATCTGCTGAGGGCAGTGAATCACCAGAGGTTATAGAATCTCATACTGGTGGTAAATGGAAGCCTGGACAGCGCCCCTCTACTGAAGAGTCCACAAGTGGCAAATGGAAACCAGGAGATCGACAGACAAAGATAAAAGCATCGCCCGTTCTTGCTCAATGGGACGATCAAGAGCCTTGGGAAGATGTCAGTGAAACCCATCCACCAGTGGAGCATACAAAAGGTAAATGGGTACCCGGAACTAAGGTTGAACGTCTCGAGTACAAGGAGGAGGCCCTTCCACCGCCGCAAGACTTTTGGTGCAACATTTGCTGTCGTAAATTAAAGACTAAAACCATCTACGAGAAGCACCTTAGATCCGGTGTACACATGAGAAAATCCGAAACCGAACAACAGCTTGAACGAGCAGCCATTGAACAATTGCAGCTGTCTCGAAGTATTCCTCGACCTACACCGTTACTTCTAGAACGAACTGTATCCCCCGAGCCAGATCCAAGCAAACGTAAACGCCgtaaaacattcatcaaatgcGAGATCTGTAAACACCGTATGCAGAGGTACTTGGTGGGGAAACATCTGATTTCGCACTACCACTACGTCCGAATGACACTCAATCCAGaacgatcgtataccatgatcCTCGACAACATCCATCAAATAGTCCTGCAGTCCCCGTTTCAATGTCGTCCGTGTCAATTTTACGCCAACACCGAAGAGAATTTCCTTATTCACTGGAACTCTGTCGAACATCGTGATAGGACCGAGGGTCCCGGCAAGTTTTGGTGTAGCTTTTGTCGTTTCGAATGCGAGGACAATAATCAAATGCGGCGCCATCTACTCGGCACCGATCATCGGGAAGTTATTCTCGCAATTAATCGATCTGTGCCGATCCACATAACCAAGAAAGTCACTATAGAATGCTCCAAGTGCCATCAAGGATTTCGCTATAACATGGAACTACGACAGCATGCAATGCGGTGTGAAGGAGCTAAAGTGATTCCGAGTGGAACTGCTTCCGATGAGTACCAGTCCAGGTTCCGATGTAAACTATGTCCCGACGAGGTTCTAAAATCAAAAACTGCCCTTCAGAGACACGAAAAGTTCAAGCACAATAAACCGCGCTACTTTTGCTCTCTTTGTGGTGAAGACTTTGAAACTGCGGCAAAGGCTGTTAAGCATCGTAAAACCAAAGCGCACAGGGACAAATCAGCTGAGAAGTTGTGCCAGATGAAGAGGGATGCGAAAATGAAGTCTAGAAAGGAGATAAGTACCAATTTGCAATGTACCAAATGTGGTCACATgtCCTCGTCTGAAGTTGAAGCCATGCTGCATCAAATAACCCATCCAGAAGGCTGcccgaaaaataaagaaaaacctcAACAATCCTTGTCTCTGATGTCAGTCAAGGAAGAACCAATTGAAACAACCAATCGAGATGTTCGCAAGTGTCACTACTGCAGTGAATCCTTCAAAACGAAGGCAGAACTAAAATCGCATTTAAACGCGGTCCACCCTGAAATAAAACACATCTGCCCTCTATGCGGAGAAGCTTTTACTCTCCCCCAAGAACTCGGCTCCCATAGAAGATACAAAATCTGCGTAGCATTAACCTCAAAACAAACACCAACATCTTCATCGCCATCGCCCAACAAAAAGGACCGCTCATTGAAAAAATCATGGAATTGCTCAGATTGCACATTTCGCTCTGTCTATGAATCGGAGCTCATATTCCATCGAATAATCCACACCGATGGACTGCAGGCACTCCAAACGCATGAAAAACTAAGCTGCCCCCTCTGTGAAAAGTCCTTTACAAAGCATTCACTTCGCCATCATCTACGCCAGCATACCAACGAGAAGACCTTCACTTGTGAGATCTGCAAACGGTCATTCTCTCGACGGCACAATTACAAGGAGCACATGCAATATGTGCACTCAGTTGGTGGTGCGAAACAACGTAAGCGTGGTCGGTCTACCGATGAAAGTTTTATCTGCGATACTTGTGgaaagatttttcggaccaAGTGA
- Protein Sequence
- MLEEDLDDTHLCIKCSATIVGLNNYVQHRKTNCSSKTSRNTIAGSYAGYEYQDSSNYAKSEVETTGGKTSKNITDPYELPYEPAADLFFSSLQLQSVQASSGGKTSSNQQILTRKATATLLSSSGRDEPEGDWQEETPNNTENLMKAVRDISETKKFEPIFKPIAFGHGSPEPEQSDDDDDVDEVFDDDDDDDDEDYVPTPYSGGKWKPGSQPAPRSGGKWKNKSQPAAVIPASHTGGKWNFKIPASEGSKWKPYARNLQADTSKVTLDSTPSNQSSQISEKLKSTAEYLPKETADDVQSSEIPETGGKWKPGFGKVPSGAKWKSTEGQEPLEILEPQTGGKWKPGGSKTLKIPPPSFTGGKWKSAEGSESPEVIESHTGGKWKPGQRPSTEESTSGKWKPGDRQTKIKASPVLAQWDDQEPWEDVSETHPPVEHTKGKWVPGTKVERLEYKEEALPPPQDFWCNICCRKLKTKTIYEKHLRSGVHMRKSETEQQLERAAIEQLQLSRSIPRPTPLLLERTVSPEPDPSKRKRRKTFIKCEICKHRMQRYLVGKHLISHYHYVRMTLNPERSYTMILDNIHQIVLQSPFQCRPCQFYANTEENFLIHWNSVEHRDRTEGPGKFWCSFCRFECEDNNQMRRHLLGTDHREVILAINRSVPIHITKKVTIECSKCHQGFRYNMELRQHAMRCEGAKVIPSGTASDEYQSRFRCKLCPDEVLKSKTALQRHEKFKHNKPRYFCSLCGEDFETAAKAVKHRKTKAHRDKSAEKLCQMKRDAKMKSRKEISTNLQCTKCGHMSSSEVEAMLHQITHPEGCPKNKEKPQQSLSLMSVKEEPIETTNRDVRKCHYCSESFKTKAELKSHLNAVHPEIKHICPLCGEAFTLPQELGSHRRYKICVALTSKQTPTSSSPSPNKKDRSLKKSWNCSDCTFRSVYESELIFHRIIHTDGLQALQTHEKLSCPLCEKSFTKHSLRHHLRQHTNEKTFTCEICKRSFSRRHNYKEHMQYVHSVGGAKQRKRGRSTDESFICDTCGKIFRTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01521487;
- 90% Identity
- iTF_01522188; iTF_01521487;
- 80% Identity
- -