Vzon031430.1
Basic Information
- Insect
- Volucella zonaria
- Gene Symbol
- -
- Assembly
- GCA_963966105.1
- Location
- OZ014531.1:71320305-71328068[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.016 5.4 9.6 0.6 2 21 97 116 96 117 0.93 2 11 1.4 4.9e+02 3.5 0.3 3 23 125 145 124 145 0.86 3 11 0.0013 0.44 13.1 1.6 1 23 178 201 178 201 0.95 4 11 0.00026 0.088 15.3 0.2 1 21 206 226 206 227 0.95 5 11 0.0076 2.6 10.6 0.6 2 23 770 792 769 792 0.94 6 11 0.019 6.5 9.4 2.6 2 23 820 842 819 842 0.91 7 11 6e-05 0.021 17.2 1.3 1 20 852 871 852 873 0.96 8 11 2.7e-05 0.0092 18.3 2.1 1 23 881 903 881 903 0.96 9 11 1.3e-06 0.00046 22.4 6.6 1 23 909 931 909 931 0.98 10 11 6.3e-06 0.0022 20.3 1.7 1 23 937 959 937 959 0.98 11 11 0.031 11 8.7 2.6 1 22 965 986 965 986 0.93
Sequence Information
- Coding Sequence
- ATGTTTATGGCGGAGGCAGACATACAAATTAAGGCTGAACCTTTGGATGAGGACTTTTCTACAATTAAAGTGGAAGAATTCATTATTAAACCTGAAATCGAAGACTTCTTACACAACTGCCTAGATTTACCGGAACGCAGTCGAAAAGACACATTAAATTTGCTAATTCCCAGAGATGAGCCTCAAACTGAAGATGAGAACAAGTTAAGTTCCATTCATTTCCGCACCCCATCACCTCGTACGCCACCTCGTACGCCACCTCGTACATTATCTCCTAAGCCAGATCTCCAATGTGGTACCTGCAAACGTAACTTTAATAACTCCCAAAGTCTTGACGATCACAAACGTCTACGATGTCGTAACCCAAATGCCTGCCGTTTCTGTGGGCAAATTTTTCGGACTTACCTTATCCTTCAAGATCATGAACAGCAGCATAGGAATAAAGGCTCCCCAACTAAGGAATCGAAAAAAACGTCTCCATTACAACCTAAGGGAAGATCGAAGCCGCCCGTAAGACATCCTAAAGTAATTTATATTTGTAGAGTTTGCACGATGTCATTCGTAACGCAGAACAGGTTAAATAAACACTACAAAGAAACTcacaatattttaaagtacATCTGTAATCGGTGTGGCATGTCGTTTAGTGTAGCTGGTCAATTCAAAAAGCATACAAAAGcatgcacagaaaaaaatacTGAAGATGTTTTAGGGATTTTAGGTATTTCTAGGACTGATGTTGTTCCTGTGAGTCTTGTTCCACGGAGTGTTACGGAAAATCTTGTTACGGAGAGCGTTGTGGCTGCAAGTGATGTTCCCATTAAAGAGGAACCGCAAGATTACAATAATATGGATAACAATTTGACGCAACAGTTACTTAATGGATCCACTATTGTCACTAAAGTTGAACCTACAGAAACAGAAGAAATGATTATGGATGCTACGGGTaacaattttgaaatcaaaacaGAAGATCCTATAGACACTATACCAACAGATTGTATAAAAGAAGAACCCACTGACAATGAGAGCGAATCACCAAGCAATGATTCCTCACTGGATTACGAAGATCTTATTCTCAAAGAGTTGATCGATCGAAAAGCCAAATCGATTGCAAGAAAAGTCTTAAATATATCAATAACATCCTCGAAAGTCTTAAATGGTTACAACAATGGAGTTACTTCCCAAATTGAATCTCCATCACTTGAAAATACAGATTTCGAAAACGTTATTGCAACAAATACTCTTACTAAAAACAGAGGAAATCAATCGATTGCTGTTGTAAAGCGCGCAGATCCCCTTGTAACTGAACAACGAACGAAAGATTTCGAAAACGTTATTGCAACAAATACCCTTGCTAAAAACAGAGGAGATCAATCGATTGCTGTTGTAAAGCGCGCAGATCCCCTTGTAACTGAACAACGAACGAAAGATTTCGAAAACGTTATTGCAACAAATACTCTTGCTAAAAACAGAGGAGATCAATCGATTGCCGTTGTAAAGCGCTTAAATCCCCTGGTAACTGAACAACGAACGAAAGATTTCGAAAACGGTATTGCAACAAATACTCTTGCTAAAAACAGAGGAAATCAATCGATTGCTGTTGTAAAGCGCGCAGATCCCCTTGCAACTGAACAACAAACGAAAGATTTCGAAAACGGTATTGCAACAAATACTCTTGCTAAAAACAGAGGAAATCAATCGATTGCTGTTGTAAAGCGCGCAGATCCCCTTGCAACTGAACAACAAACGGAAGCTGTTATCAATGGAAACCAATTAGGTGGTGGTATTGTATCTGCAAGTAAGTTAGGAATCTTTGGCACTGCAAATCAATCAACCGATTCAAAAACTATAAAAACAGTAACGAAATTACCAACACGAAATGTAAACCAATCAACTGGTGTTCTGATCACATCTCCGCTCCAAACAGTACAAATCAAGTCTACACGCCTTCCGATGAAACCGAAATCAATTACTGAGTCAGCATTAGGTTCATTTTTGATTCCGAATACCACCTCCACGTCTAATTTTCAACATCGCAGTGATATCGAAATGATATCTGATTCTAAAtctcaatttcaaaacaaaacagaagtGATAGAAAGCCTAAAGCAGGAATACCAGAaggcgaaaaagaaaaaactcaacGAGGGATTGATAAACGATATCAGCGAGCATTCAAAACCATCTGTACAGCCCAGCGATAAGATGGCAACTCCATGTTCGGTGTTCTTCCCTCTGTGTGGTGACCCAGAATCCTACAACGAAGCTATTCGAATGTTAGACAAAGCTTTTCGCTACTCATGGATATGCTCTTGGTGTCCGCGCCGCTATATCCAACGTCATGCATTTTCAAAACATGTATCTAGTGCCCACTGTAAAAACGAACTTGATATTCAGGATTTGCTTTTTGAACTCAGGCCTGAACGCGCTCAAGATGTTATGCCTGAATCGTGTTACTGCCATATCTGTCGTGTGACATTAGCCGATCCAGACTCGTTACAGAAGCACAGGACCGAATTCCATAAAAAAGACAGCACACCCAAAGTACAATTCAAGTGCGAAAAATGCGGAAAGTTCTGCTCCACACGGAGCACTTTATCAGACCATATAGAGGCCGATTGTGGCAGAGAGCCACAGTACGTATGCAAGATCTGCGATAAGAAATTCTACACAAAAAGCACACTGAGTTTACACAATACTATGCATACAGGCGTGTTGCCACATCGGTGTGAATACTGTGATAAATGCTTCCGGACTAGAGGACAACTAACAGTCCATACGAGAACACACACCGGCGAACGGCCGTTTCCTTGCAAGGTCTGCGACCGACGATTCACCCATCGGGAGACACTCATTGCTCACCTTTCACGTCACATTGACATGAAACGCTACAAATGTTACGGCTGTGATAAGTTCTTCTCGTGCATTTCAGGCCTTAAAACACACCGACTCACTCGTATGAGTACCTGTGGGCAGATCAGATTAAACGCACGCCCGGTCGGACCTCGAGTTCGAGTGATCAAAGGCAACGTTATCTTTGAGCCGCAACCCAAAATCAATCCCTACTTCCGACGATATGATCTTAACTGCGATAAAAACCGCCAAAATCCAAATAAAAATGGTATCTTCCAGAAACAGAACCAGGAGAACGTAAAGGATCTCGTAAAAAACAATGAGACTGTCTCAATGGCAGAAAAGAGCTAA
- Protein Sequence
- MFMAEADIQIKAEPLDEDFSTIKVEEFIIKPEIEDFLHNCLDLPERSRKDTLNLLIPRDEPQTEDENKLSSIHFRTPSPRTPPRTPPRTLSPKPDLQCGTCKRNFNNSQSLDDHKRLRCRNPNACRFCGQIFRTYLILQDHEQQHRNKGSPTKESKKTSPLQPKGRSKPPVRHPKVIYICRVCTMSFVTQNRLNKHYKETHNILKYICNRCGMSFSVAGQFKKHTKACTEKNTEDVLGILGISRTDVVPVSLVPRSVTENLVTESVVAASDVPIKEEPQDYNNMDNNLTQQLLNGSTIVTKVEPTETEEMIMDATGNNFEIKTEDPIDTIPTDCIKEEPTDNESESPSNDSSLDYEDLILKELIDRKAKSIARKVLNISITSSKVLNGYNNGVTSQIESPSLENTDFENVIATNTLTKNRGNQSIAVVKRADPLVTEQRTKDFENVIATNTLAKNRGDQSIAVVKRADPLVTEQRTKDFENVIATNTLAKNRGDQSIAVVKRLNPLVTEQRTKDFENGIATNTLAKNRGNQSIAVVKRADPLATEQQTKDFENGIATNTLAKNRGNQSIAVVKRADPLATEQQTEAVINGNQLGGGIVSASKLGIFGTANQSTDSKTIKTVTKLPTRNVNQSTGVLITSPLQTVQIKSTRLPMKPKSITESALGSFLIPNTTSTSNFQHRSDIEMISDSKSQFQNKTEVIESLKQEYQKAKKKKLNEGLINDISEHSKPSVQPSDKMATPCSVFFPLCGDPESYNEAIRMLDKAFRYSWICSWCPRRYIQRHAFSKHVSSAHCKNELDIQDLLFELRPERAQDVMPESCYCHICRVTLADPDSLQKHRTEFHKKDSTPKVQFKCEKCGKFCSTRSTLSDHIEADCGREPQYVCKICDKKFYTKSTLSLHNTMHTGVLPHRCEYCDKCFRTRGQLTVHTRTHTGERPFPCKVCDRRFTHRETLIAHLSRHIDMKRYKCYGCDKFFSCISGLKTHRLTRMSTCGQIRLNARPVGPRVRVIKGNVIFEPQPKINPYFRRYDLNCDKNRQNPNKNGIFQKQNQENVKDLVKNNETVSMAEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -