Vzon049803.1
Basic Information
- Insect
- Volucella zonaria
- Gene Symbol
- -
- Assembly
- GCA_963966105.1
- Location
- OZ014532.1:194846509-194865807[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.4 1.4e+02 5.2 1.7 5 23 136 155 135 155 0.90 2 17 0.11 38 7.0 0.4 1 23 264 286 264 286 0.94 3 17 0.0067 2.3 10.8 0.7 2 21 311 330 310 331 0.93 4 17 8.7 3e+03 1.0 2.3 8 23 330 345 329 345 0.91 5 17 0.71 2.5e+02 4.4 2.2 1 23 368 390 368 390 0.96 6 17 0.00027 0.093 15.2 0.2 1 23 396 418 396 418 0.98 7 17 1.5e-05 0.0051 19.2 4.1 1 23 424 446 424 446 0.98 8 17 1 3.4e+02 4.0 6.3 1 23 452 475 452 475 0.94 9 17 3.9e-07 0.00013 24.1 0.6 1 23 599 622 599 622 0.96 10 17 1.5 5.3e+02 3.4 2.4 1 23 650 672 650 672 0.93 11 17 2.5e-05 0.0087 18.4 2.2 2 23 688 709 687 709 0.96 12 17 0.56 1.9e+02 4.7 0.6 1 23 715 738 715 738 0.93 13 17 0.076 26 7.5 0.2 1 23 751 773 751 773 0.97 14 17 0.02 6.9 9.3 4.0 1 23 795 817 795 817 0.98 15 17 3.7e-05 0.013 17.9 0.1 1 23 823 845 823 845 0.98 16 17 2.7e-07 9.4e-05 24.6 4.6 1 23 851 873 851 873 0.98 17 17 5e-05 0.017 17.5 0.6 1 23 879 902 879 902 0.96
Sequence Information
- Coding Sequence
- atgactgATGTTCGTTGCGGACAATGCAACgaaataaataattgtGAAGCAATTAAATGTGAGTCTTGTAGAGCTAATCTACCGGATGCTAACCGCCGTGCGCCGGATGTGGATGATTGGGAAGAGGATTATCGCTTTATTGAGGAGGCTGAATTAAAAGGTGAAGTCTACGGCATAGAGAACGTCTGCGATGCAAATGTTTTCTTTGAAGTCCTGACAGTGGAGGAGACAAAACCAAATTTTACGGAAGAACACACATTTAACCAAGATATCAACTTAAAAGATCCTTCGATTTCACATAAGGCTAATGAGAGTATAAATCCAATCTTCAACAATAATGGGGAACAAGTTCAAGAATCCGTTCAATTAGTAGCGAGTGAAGTTGCGAATTCTGCAGGTCAATACCATTGTAAAATATGTTCAAAAAGAAAAGCATCTTTAAAGGCGCACGAAGACAGAGTCCATAATTCAGATGACACAAATCAATACGACAAGGATTTAGAAGTCGTTGTGCCTAATTCTAAGCGCTGTGTTACACCAAATTTCTCAGAATCCTGCGACTCAGAGTATGAACCTCCGGACGATATCGAAGATTACGAATTCACCGCGAATAAAAAGCAACCGCAAATTCCAGAAAAAACCAAGCGAAAATACGCAAAAGCTTGTAATATAACTGACTTGGAAAACAACAATTCTGAACAAAATTCTATACCTACTTCGGATGGCAGTCCTCCACAGAATTTGTTAAATCCGAAGCAGAAAAAGCCCAAGTTAAAGCGACATATGGTTTACAAGTGTACTGCATGCGGAAAGATCACTAGAAACTACGAAGCGCATATAAATCACATTGCCATCCATGAGGCGCCAGCTGAAAGTCTAACAGAAACCACATCTCTAGCAAAGCTAAAGAAAACTCCCAGCGGCTTTCTGAAATGCAAAGAATGCAAAAAGGTCTTCATGAGCGAACGCGAATTCCTAATGCACGAAAGGAGGTTTGTGTCACTATTTTTATTGACACATCACAGAAAAAACCACACGGATGCCATCAAAAAGGTGGAAGAGATgacgatcctcaagaaaggtgATGATGGAAAAGCGGTCTATGTGTGTAAAGTGTGCGCAAGAACTTCGAAAAATAGATATAGACATGAGGAGCACTTAAGAATTCACACCAAGGAAAAACCATACGTATGTGAAGTGTGTGggaccaaaattgcaacagcgAACCAACTGGCGCATCACTTGCGATTGCATGAGAATGACAGACCGTTCAAATGTGATATCTGTGATGCCACATACCGGCAcaagaaaagtttaaaaaagcatttaaagctTCATACTGGTGAGAGACCGTTTCACTGCCGCTATTGCGAaaaaacttttgcttttaattatACGAGAGCTGGTCATGAACGAAGATGTCATATTAGCAAAAATAAAGGAACTCCACGGCGTCCGAAGCGCTCTAATTTGAAGATAGTTTCTAATGTGGAAATGCGTAACGATGAGACTGCAAACATAGATTCAGTAGAGACGGGAAAAAAATGTACTTCTGAGTATGATGAATGCGAGGACGATTTTCGCTTCATCGAGGAAGCAGAATTAAACGGCAAAGTCTACAACCTGGAAACGTTCGATGGTAGATTTCAAGAGTTAGAGCCCTGTGAAGGGAATCAAATCACACAATTCATTAAACATGAACCGGACATTGATATCCAAACTGATTTCGTAATTAATGATAATGAAACGAAGGATGAGACATTCACTAAAAGTAGCCCAGCGAAACAATTACAATACCAGTGTAGTGAATGCAGTAAGAGTTTTAAACGAAAAGCAACGCTAAGGGCACATTTAAACGCGGCACACTATCAAAGTGATTCGGAATCGGAACGACTACCTTCTAAAACAAAGTCCCGGCAAACATCTTCCAAAACCACACCTCGAATTTTTAACTGCAAGTGGTGTAACAAAATCACAAAAGGCCTTGAGCAGCATTTAAAACACGTTAAATCacacgaagaagaagaagaagaagaaagcaCATCTGAGATCCTCTCATTGAAATGCCTCGATTGCAGTAAAACATTTTCGAGTAAGTTTGATCTTAAGGTTCACAGGAATCAACATGAGGGAAAAACTGTGTACCAATGTGATGAATGCAAAGTTTTTCTGTCCAATGAAAACATCTTAAAGCAACACAAAGAAAAACTGCATAGTCAAAAACCAGAACGATTTCCTAATGATAAGAAATTCAAATGCATATATTGCGGTGAAGGATTCCCCTTACAAATCCTGATGGTAAATCATAAGAAAACCCATACTGAAGATGCCAAGCAAATACATGAAACAGCAATTATCGACAAAGTCAGCGGACGTATAGCTTACACCTGCAAATTGTGTGGCAAATTTTCGAGTAATAAATCGCGTCACACGGATCACCTAAGGGTTCATACAAAGGAGAGGCCATTTAAGTGTGAAGTTTGTGGAGCTGCATTTACTGCGCGAAGTTCGTTAATACAGCACGAGCGCTTGCATTCGGATGAACGACCTTATAAGTGCAACATTTGTGGCAAAACCTATCGTCACAAGAAAAACCTGAGAAATCATTTAATAAAACACACCGGAGTAAAACCCTTCACATGTGACTACTGTGATAAAACGTTTGTCTTAAAAACTACCTTAGCTGATCATGAGCGTCTTCTGCATACGGGTGAAACGCCCTATCAGTGTGAGATCGACGAAAGTGGGGAATACTCCGATAATATTTGTTGGGACTGTGAAGATACATTGCTGGGGTTCCATAAAAGTGTTAGCGAAGATAACGACGACGAGGAGGAACCTGTAGTAGTTGATGACGACGAAATTCTCTATAAAAGTTTGGAGAAAACAATACGAACTCATCGTTTTCCGAAAGCagttgaaataattaaaattgattcatCGGATTCGGAACATGAAGAGCGTGTGATAGTGCCTAAACAAGACGATATCGTACGAGTTGAATCTGCTAGCACTACTGTTGGTTACTcgaaaaataattgtgaaagtTATTTAAACTATAAGGCGGTTGCAGTGAAGAGGGTAAGCTAA
- Protein Sequence
- MTDVRCGQCNEINNCEAIKCESCRANLPDANRRAPDVDDWEEDYRFIEEAELKGEVYGIENVCDANVFFEVLTVEETKPNFTEEHTFNQDINLKDPSISHKANESINPIFNNNGEQVQESVQLVASEVANSAGQYHCKICSKRKASLKAHEDRVHNSDDTNQYDKDLEVVVPNSKRCVTPNFSESCDSEYEPPDDIEDYEFTANKKQPQIPEKTKRKYAKACNITDLENNNSEQNSIPTSDGSPPQNLLNPKQKKPKLKRHMVYKCTACGKITRNYEAHINHIAIHEAPAESLTETTSLAKLKKTPSGFLKCKECKKVFMSEREFLMHERRFVSLFLLTHHRKNHTDAIKKVEEMTILKKGDDGKAVYVCKVCARTSKNRYRHEEHLRIHTKEKPYVCEVCGTKIATANQLAHHLRLHENDRPFKCDICDATYRHKKSLKKHLKLHTGERPFHCRYCEKTFAFNYTRAGHERRCHISKNKGTPRRPKRSNLKIVSNVEMRNDETANIDSVETGKKCTSEYDECEDDFRFIEEAELNGKVYNLETFDGRFQELEPCEGNQITQFIKHEPDIDIQTDFVINDNETKDETFTKSSPAKQLQYQCSECSKSFKRKATLRAHLNAAHYQSDSESERLPSKTKSRQTSSKTTPRIFNCKWCNKITKGLEQHLKHVKSHEEEEEEESTSEILSLKCLDCSKTFSSKFDLKVHRNQHEGKTVYQCDECKVFLSNENILKQHKEKLHSQKPERFPNDKKFKCIYCGEGFPLQILMVNHKKTHTEDAKQIHETAIIDKVSGRIAYTCKLCGKFSSNKSRHTDHLRVHTKERPFKCEVCGAAFTARSSLIQHERLHSDERPYKCNICGKTYRHKKNLRNHLIKHTGVKPFTCDYCDKTFVLKTTLADHERLLHTGETPYQCEIDESGEYSDNICWDCEDTLLGFHKSVSEDNDDEEEPVVVDDDEILYKSLEKTIRTHRFPKAVEIIKIDSSDSEHEERVIVPKQDDIVRVESASTTVGYSKNNCESYLNYKAVAVKRVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -