Basic Information

Insect: Volucella inanis
Gene Symbol: PRDM1
Assembly: GCA_907269105.1
Location: OU026154.1:157938494-157943192[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.5e-05 0.0042 18.5 2.5 1 23 815 837 815 837 0.99

2 5 7.5e-06 0.0013 20.1 5.1 1 23 843 865 843 865 0.98

3 5 1.6e-06 0.00027 22.2 4.3 1 23 871 893 871 893 0.98

4 5 0.00053 0.088 14.3 2.4 1 23 899 921 899 921 0.97

5 5 8.9e-05 0.015 16.7 0.1 1 22 927 948 927 948 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.5e-05	0.0042	18.5	2.5	1	23	815	837	815	837	0.99
2	5	7.5e-06	0.0013	20.1	5.1	1	23	843	865	843	865	0.98
3	5	1.6e-06	0.00027	22.2	4.3	1	23	871	893	871	893	0.98
4	5	0.00053	0.088	14.3	2.4	1	23	899	921	899	921	0.97
5	5	8.9e-05	0.015	16.7	0.1	1	22	927	948	927	948	0.96

Sequence Information

Coding Sequence: atgagCCACGTAATGGACTCCACAGCGCAATCAACGACAACAATCAGTCCGCTTAGTAACAATCGTAGTCCCTCACCAGATGGTTCACAAGACTATGATGTGACACGTATGAAAGAGGAAGACTTTGAACGACTGGCGGTTTATATTGTGCCCGATGTACAATGTGATCGCGGTGTACCAAATAGGGCGGACAAGACTCTGCCAAGGAGTTTGACATTAAAGCCATCGATGGTGTTATCAACGCCAAATGTTAAGACTGAAGGAGTATGGAGCACCGGTGTTATACCACGTGGAACAAGATTTGGGCCATTCGATGGCGTTCCAACTCCTAACTATCCCAACGATAAAAATGCCGCAAGATACTTTTGGCGGGTGGAGGGTCAGTGTCATGTTACCTATGGGAACATTAAGATCTTTAAAGATGATGATTTCTACTATTTAGACGGCTCTGATCGATCACAGTCCAACTGGATGCGGTACGTTGCATCTGCATACAGTCTATCCGTCATGAATTTAGTTGCCTGTCAGCATcaagacaatatttttttttacaccattCGCGATATTATGCCCAACGAGGAACTAATGGTGTGGTATTGTAAGGACTTTGCCAAACGATTAGGTTATGATGTTGATCCAGAACGAACCACCTATAGTATATGTCAGAATAAAGATGACGACGCAGAAGAGTCAGTAACTACGATAAAGAAAACCTATGCATGTATGCAAGCACCAGAAATTCCACCTGAGGTAGCATATAATCATATCACCTACGTAATGGGCTTACACATTCCACAGCGACGAAATTCTCTTACACCGAGTCCATCACCGCCAATCACGAGCTCACATCATTCCCATTTACAGCagcatcatcaacaacaacaacaaccacaacagcatcaacatcatcaccatcagcaacaccaacaacaccaacaacaccaacaacaccagcaacaccatcaacagcagcaacagcagcaacaccagcaacatcagcaacaccagcaacaacaacatcaaccacATTTACGGCATACAAATAGCCATCAAAGTGTTTTGCATTTAAAACCTGAACCCGATCAAAATCGTATTCAAGTTATCGTCCGTGATCGTTCTCCTTCAGTTAGTGACTGTGGCAGTGGCAAAGATAAAGATGTTCAGTCACCTATCTCCCACAAAGGTGATGCACAGTACGAGCATCAGTTAACACCGAATGATGGATCAGTACGATCTGTACGTTCCGATGAAGGCTATCATAGTAACGAATATCACGAGGATGGACTAACACCACCAGAAGATTCTAGCGACAGTGAGGAAAGTGAGCATAATTATGTGCTGGATTGCTCAAAGAAAGCCATCGAACCCAAAGAGACTGTAATCACACAAAAACTCAACGATTGTGATAAAAACGAGTACCGCAAGTTCAAGGTAAAGTTGCCTCTGAAGTATGAgttcaaaaataacaaatgcGTAAAGACTGAAGTTGATAAGGATATCACGCTTACGGGTGTAACAACTACGTCAACAGaagaggaaatggttttaacCACTCTGACAACTGCGCCAATGGATGAGGAGCTTATAAAGAGGGTATCAGCGGCGACAACAACATCGACGCCAGCCACAAGTACAGTGATTGTACTAGAAGGAAGCCAAGAACCACATACAATTGTTCCTCTAAATAAACCATACTATGAAGCTGAGACTTTATCCCCACCACCGCAAACTTATATGCGTTTCACCCCACCTAGCTCGAGTATACTAGAGACTATCTTGACTGGAAATAGAACTTCAACGAGTAGTAGTAGTCTTGATCAATCTTTACGTCGCCAGCCTAATGCAACACCTCCACCCACATCGCCGACTGAAATGGCATATTCATACAAGAAATCCCAGCGGTACGGTAATGCTGTTAGCCCAGATTCTAGTTCAAATCTGGCACAGGGGTCACAGCACTTGCATGATCCAGACATTGTTATGTCGTCGTCGAGAATCAATTTAAAGAGCGACAGTCCGCCACCGCAAAATATTGTCTACTCAACAACGCAAACATTTCAAGACGGCCATCAATCTCCACACTACGGCGCATACTCCCCATACTCAAATAATGGAACCAATGTTATATCACATGCACCGACATCAACATACTCACCACCGCACAGCAACAGCCCATTTGATCGAAATTCAAATGGTGGATCGACACCAAATCTCCATCTCTTACAGAACAGCACTCAAATGCTTAACCATCCGCTAATGCAACCACTTGCACCACTTCAAAGACTGTCACCCTGTACTGTTCGCATATCGCCACCTAGTAGCTTAAGTCCAGATGGGAATTCATGTCCTCGCAGTGGTAGTCCATTGAGTCCAAATTCTCTTGGTTCACGTGGCTATAGATCTCTGCCATATCCTCTCAAAAAGAAGGATGGAAAAATGCACTATGAGTGCAATGTTTGTTGTAAGACTTTTGGGCAATTGTCAAATCTAAAAGTGCATCTGAGAACACATTCAGGCGAGAGACCTTTTAAGTGCAATGTCTGTACGAAATCCTTTACACAGTTGGCACATTTACAAAAGCACCACTTGGTACATACTGGCGAGAAACCACATCAATGTGACATCTGCAAGAAACGTTTTTCCTCTACATCGAACTTAAAGACACACTTAAGACTGCATAGTGGACAAAAGCCATATGCTTGTGATTTATGTCCACAGAAATTCACTCAGTTTGTGCATTTAAAATTACACAAACGTTTGCATACAAACGATAGGCCATATGTATGCCAGGGATGTGATAAGAAGTATATTAGTGCTTCGGGTCTTCGTACGCATTGGAAGACAACAAGTTGTAAGCCAAACAATTTGGAAGAGGAACTAGCTATGGCAGCAGCAGCTACTTCGGAATGCTTAGgTCCAAGCGATAAAGATCATCCAGAGCCAGACTCTCGTGAAGCCTTTGAGCTTCAACAACAAATCCATGCCCATACACATCCCCACCTTCGTCACATCGGCCATCATTCCCCAACACGACTGATTACAATTCATGCGCAATCACCTCCTGCTAACCACCATCAGATGCATCATCAAATTGTAGCCGCAGCACCCCAACCAACTCAACAACAATTGCAAAATTCTCATCACCAACAATTACCCCAACAGCATTCTTCACAACATCTTACCATCCAGCAGCAACAGGTGGTGGTGCTTGCAAGTCCCAGCGCTCATCAGCAGTCTTCTCCACAACAACAGCATAATCCCTCAACTATGTTGCTTGCAACAACCTCCCAGTTGCAACAGCATGCCCACACACATCCCCATCATTCACATCACCTACATATTCAtcaccaacagcaacaacaacaacaacagcagcaacaacaacaacaacagcagcagcagcagcaacatcaaACCATTAAAACATCTATGCAAAAGGGTCCAACCATCATGCCACATGTCGTACAAAGCACCGCCACAACGAATCCCAGTGACCAATACGTGGTGACGAGTCATCCGCATCACAACTCACATCCTCATTCACAGTCGCAAGAATCCCGACCCACAGTAATAGAATCCAATCAACCGATGATCATCGAGTGCACGTAA
Protein Sequence: MSHVMDSTAQSTTTISPLSNNRSPSPDGSQDYDVTRMKEEDFERLAVYIVPDVQCDRGVPNRADKTLPRSLTLKPSMVLSTPNVKTEGVWSTGVIPRGTRFGPFDGVPTPNYPNDKNAARYFWRVEGQCHVTYGNIKIFKDDDFYYLDGSDRSQSNWMRYVASAYSLSVMNLVACQHQDNIFFYTIRDIMPNEELMVWYCKDFAKRLGYDVDPERTTYSICQNKDDDAEESVTTIKKTYACMQAPEIPPEVAYNHITYVMGLHIPQRRNSLTPSPSPPITSSHHSHLQQHHQQQQQPQQHQHHHHQQHQQHQQHQQHQQHHQQQQQQQHQQHQQHQQQQHQPHLRHTNSHQSVLHLKPEPDQNRIQVIVRDRSPSVSDCGSGKDKDVQSPISHKGDAQYEHQLTPNDGSVRSVRSDEGYHSNEYHEDGLTPPEDSSDSEESEHNYVLDCSKKAIEPKETVITQKLNDCDKNEYRKFKVKLPLKYEFKNNKCVKTEVDKDITLTGVTTTSTEEEMVLTTLTTAPMDEELIKRVSAATTTSTPATSTVIVLEGSQEPHTIVPLNKPYYEAETLSPPPQTYMRFTPPSSSILETILTGNRTSTSSSSLDQSLRRQPNATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLAQGSQHLHDPDIVMSSSRINLKSDSPPPQNIVYSTTQTFQDGHQSPHYGAYSPYSNNGTNVISHAPTSTYSPPHSNSPFDRNSNGGSTPNLHLLQNSTQMLNHPLMQPLAPLQRLSPCTVRISPPSSLSPDGNSCPRSGSPLSPNSLGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLGPSDKDHPEPDSREAFELQQQIHAHTHPHLRHIGHHSPTRLITIHAQSPPANHHQMHHQIVAAAPQPTQQQLQNSHHQQLPQQHSSQHLTIQQQQVVVLASPSAHQQSSPQQQHNPSTMLLATTSQLQQHAHTHPHHSHHLHIHHQQQQQQQQQQQQQQQQQQQQHQTIKTSMQKGPTIMPHVVQSTATTNPSDQYVVTSHPHHNSHPHSQSQESRPTVIESNQPMIIECT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00389986;
90% Identity: iTF_01521511;
80% Identity: -