Vina022602.1
Basic Information
- Insect
- Volucella inanis
- Gene Symbol
- -
- Assembly
- GCA_907269105.1
- Location
- OU026155.1:158264146-158265700[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.13 23 6.7 0.6 1 23 178 203 178 203 0.90 2 9 4.9e-05 0.0082 17.6 3.5 1 23 209 231 209 231 0.98 3 9 0.52 88 4.9 0.1 2 10 237 245 236 255 0.86 4 9 0.071 12 7.6 0.4 2 17 266 280 266 289 0.84 5 9 8.1e-06 0.0014 20.0 2.5 2 23 296 317 296 317 0.98 6 9 4.6e-05 0.0077 17.6 3.9 1 23 323 345 323 345 0.98 7 9 5.5e-05 0.0092 17.4 5.0 3 23 352 372 350 372 0.97 8 9 0.14 23 6.7 2.6 2 23 380 402 379 402 0.89 9 9 3.4e-05 0.0057 18.1 2.7 1 23 427 449 427 449 0.98
Sequence Information
- Coding Sequence
- ATGAGTACCGTGGAGAGTACCTGTAGAACATGTGGAAAAGCATCTGACCTAGAAGATGGTTCGGATCTATTTCCAATGTATTCATCAACCGATTACATTAAGGAGCGGAATATGATTCAGGAGGAGTTCAGAATTTGGAATCTTAATATCTCTAAAGATGATGGCTTACCTCAGAAAATTTGTTTGACTTGTTTTGATAGTTTTTGTCAAATTCACAATTttcgtaaaatatgccaagaaGCGCAGATGAACTTTGGGGAGCTTTGCACAGGATTGGACATTATAATAAAGCAAGATTATGGTGACATAGATTTAGACAATCCAGAAGATCACGAAAGCGAACAAAAAGTTACAGTTCAAGAACACTACCATTTTCCTCCTCATGACCGATTCAAAATTCCAGATTCACCCGAGTTGGAAACAGattgcaattttaataaaaatatgaattcaGATGAGAAAAGACGTAGAGAAATTGAACTTCAAGACACAATTGAAGAAATGGCTGCTGTTCTGCCAGAGTTTAAACAGTTCCAGTGTGAATATTGCATGGACGTTGTAAGCTTTGATGATGCAGAGGCGCTTAATAAACACTACAACATCTTACACTCTTCGGAAGAGCCATATCCTTGTCCAAAATGCGACAGGtgcttcaataaaaaatcaaaaagaaatagtCACGCACGAGTCCACTTCCGCATAATAACCAAGTGCGAAATTTGTGGTAAAAAGGTCCGAGGTGGAAAACATATGATGGCGCAACATAATGAGTATTATCATGTGGAAAAACCTCGAGAATGTCAAACATGTGGAAAGAAGTTTGATAGCACTACATTAAAGAGATTTAATTACCACATGGCTTGGCACGATGATACAAAGCTTCGCAAGTGCAAATATTGCGACAAGAAGTTTATTCAGTTAACACATTTAGCGGTGCATGAGCGAATGCATAGCGGCGAAACGCCCTTTGAATGTACACATTGTGATCTGAAATTTAAGGACCCGAATGTGTTTAACCGCCATCGGAAAACTCACGATTTGGAAGAATTGTTTTGCCCACAATGTCCTAAAAaaTTCTTCCACAAGCATGGATTGAGACTTCACATGAAGATGCACAATCCTAATTATAAAATTCTGTACTGCGAACCATGCCAAAAGAGTTTCTTTTCTATAGTAAATCTGAAACAGCACAATCATAAAAAGCATGGGGGAATAACAACGCAAGCAATTCTTAATATTGAGAAAAAACGACAAATTAAAATTCCATTAGTGAAGCCACACAAATGCAAATTATGTCCGGAAACGTTTGTGCTACGTAAACAGTTGTTAAAACACTTGAATACTCACGACGGGGAAAGTTTGTTTTAA
- Protein Sequence
- MSTVESTCRTCGKASDLEDGSDLFPMYSSTDYIKERNMIQEEFRIWNLNISKDDGLPQKICLTCFDSFCQIHNFRKICQEAQMNFGELCTGLDIIIKQDYGDIDLDNPEDHESEQKVTVQEHYHFPPHDRFKIPDSPELETDCNFNKNMNSDEKRRREIELQDTIEEMAAVLPEFKQFQCEYCMDVVSFDDAEALNKHYNILHSSEEPYPCPKCDRCFNKKSKRNSHARVHFRIITKCEICGKKVRGGKHMMAQHNEYYHVEKPRECQTCGKKFDSTTLKRFNYHMAWHDDTKLRKCKYCDKKFIQLTHLAVHERMHSGETPFECTHCDLKFKDPNVFNRHRKTHDLEELFCPQCPKKFFHKHGLRLHMKMHNPNYKILYCEPCQKSFFSIVNLKQHNHKKHGGITTQAILNIEKKRQIKIPLVKPHKCKLCPETFVLRKQLLKHLNTHDGESLF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01522963; iTF_01521496;
- 90% Identity
- -
- 80% Identity
- -