Vina002076.1
Basic Information
- Insect
- Volucella inanis
- Gene Symbol
- -
- Assembly
- GCA_907269105.1
- Location
- OU026153.1:56269937-56274826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 6.5e-05 0.011 17.2 2.0 1 23 91 114 91 114 0.95 2 26 1.9 3.1e+02 3.2 1.0 1 20 151 170 151 172 0.91 3 26 0.0096 1.6 10.3 1.9 3 23 188 208 186 208 0.97 4 26 0.0035 0.59 11.7 2.0 3 23 217 237 216 237 0.97 5 26 0.083 14 7.4 0.2 1 23 313 335 313 335 0.93 6 26 0.43 72 5.2 1.1 2 21 345 364 344 365 0.94 7 26 0.036 6 8.5 1.0 1 23 374 397 374 397 0.94 8 26 0.001 0.17 13.4 2.9 2 23 406 427 405 427 0.98 9 26 3.9e-06 0.00065 21.0 0.7 1 23 434 456 434 456 0.95 10 26 2.5 4.1e+02 2.8 1.8 2 23 487 508 486 508 0.93 11 26 0.0029 0.49 12.0 2.6 1 23 597 620 597 620 0.96 12 26 4.5 7.6e+02 1.9 3.5 1 21 627 647 627 648 0.83 13 26 0.03 5 8.8 1.5 1 23 657 680 657 680 0.95 14 26 10 1.7e+03 0.9 5.4 1 23 690 712 690 712 0.88 15 26 5.2e-06 0.00088 20.6 0.8 1 23 719 741 719 741 0.98 16 26 0.00027 0.044 15.2 1.0 2 23 765 787 765 787 0.97 17 26 0.00019 0.032 15.7 0.5 1 23 828 851 828 851 0.97 18 26 1.2 1.9e+02 3.8 2.0 1 22 858 879 858 879 0.96 19 26 0.71 1.2e+02 4.5 1.4 1 23 888 911 888 911 0.92 20 26 0.074 12 7.6 3.1 1 19 917 935 917 936 0.97 21 26 0.00023 0.038 15.5 3.2 1 23 947 969 947 969 0.98 22 26 1.1e-05 0.0018 19.6 0.3 2 23 989 1010 988 1010 0.95 23 26 0.00036 0.06 14.8 4.3 1 23 1016 1038 1016 1038 0.99 24 26 1.4e-06 0.00023 22.4 3.5 1 23 1044 1066 1044 1066 0.98 25 26 4.4e-07 7.4e-05 24.0 2.2 1 23 1072 1094 1072 1094 0.99 26 26 0.00013 0.022 16.2 0.1 1 23 1100 1124 1100 1124 0.93
Sequence Information
- Coding Sequence
- ATGATATGTAACTATGATAGCGCATCAAATGTCCATAATCTTCGTTCGCATATAGTCTCACATAAGAATTTGGAATTGGTAGAAGACCTAGGAAATAGCAGTGTCGTAAAAAGATTCTATCCCGATAAAGGCTTAAAGGAAGTTATCCTTTTGATTAAAGATCAAATTGAGGAAAACAAATTAGGTAAACTTTATTCGATAATTAATGAGAACACCTTTGAAATGGGTATCAGCGATTCGGATGAAAGCGATCCAGACTTAAATCATCAGTACAACTGTGAAGTTTGTAACGAATCGTTTAATCGGAAACACAAACTCATGACACATCAAGCCAACGAGCATTCGTTTCAAGAATGTCCCTACAAATGTGGTAAGTGCAAACTGAAATTTACTTGCCAAGAGAtatttaaaagtcaccttaaaCACCACTGCGAGAATCCTGACAAAGAATACATATGCAGAAAATGTCCAGGTCGATTTACTTGGCCAACGAACTTTGAGAATCATGAATGCAGAAAAAGGAACATGAAAGCAacagaattaaagaaaaagagtACTGCATGTGAAGTTTGTGAAAAGGTATTTACATGCCTTCGAGATCTAAGAATTCACAAAAAGACACATATACCGGGCGATAAATCTCGCAATTGTCTGATATGTGGCGAAACATTTTTTCGACCGCAGGACCTTCGTTGTCATTTAAAGACGCATTCGAAAAATGGAGAAACAGACGTCAATTTCGAAAACTGTGAATTTGTAACCAGCTTTTATCCAGATGCAGAAAAAAGTGTTATTACTAACCATATTCGAATCTGCTTTAGAGAAAATAGACTTTGGCAGTTTTATATGGTGGTAAACAAGTTCGGCCTTGAACTAACCCTTAGTGACTCGGATAGTGAAGTTGAAAAGCAGACTACCGAAGAAACTTCCGAAACTTACATATGTGAGTTGTGTGATATGAAATTTCCACGTATGCAAGCAATTCTTCAACATCAATATGATCATGGTCCAACAGTAAATAATTTCCCCAATAAATGCGATAATTGTAAGGAGCAATTCGTTTGTGAAGCTCTTTTAAGACGTCACGTAAGAAGTGAGTGCCTCAACCCATACAGAAAACACGCTTGTTCAAAATGCGGGATACAATTCACATGGAAGATCAATTTAGATGCTCACCTCTGTGTTATACACGAGAAAAGTTCTGAGGACAACAAAACATGCGAAATTTGCGGAAAGAAATTCATTTGGTTAAAAGACCTGCACAGGCATAAACGAACACATGTTCCTGATGGGAAGAAATTTGAATGTATTGTAtgcgaaaagaaatttaatcgaAAAGACAACTTGCGAGCACATATGAAAATTCACGCAATAGATTATAAGCAAAAGCCAAACACCACAATAAAATGGGAGCAACAAGATGAAAACATGTGCAGGCCACATGGTGAGAAAATTATTCAGTGtaagatttgtttttcaaaacataataCAATTCGAGATTTAAGGGCTCATTTGTTGACGCATAAGAATCCGAATACACTTGGACAAAAGGAATCAAACATAATGGCGCTTTCCATGTTACTTTATAACAAACAGATGGACCTTCGAACGCTTTCACAGACAATAAGCAAAGACCTAACCTGTGGCACAAACGATCATTTCTACTCCATTACAAACGAAATGGGCTATGAGTTGAATTTGATTGATTCGGAAACATGTACTGATATGGAGTCaaatgacgacgatgatgatgatagaAATAGGAACGGTGTCGATGTATCCAAAGGTTACATATGTAAATTGTGCAATAGAACGTttgatagaaaatttaaaatttttgaacatcaaAAGAATGAACATTTGTGGATGGAACTTCCATTTGAATGTGTACATTGTTCAGCTAAATTTGTGTGTGAAAGTCTTTATCGGCatcatatacaatacaattgtGAAAACGCTGAAAAGCAATTTAAATGTAAGCGTTGTCCTCTGAAATTTATGTGGAAAGACAATCTAAAAATCCATGAGAAGTATTTGCATGATAAGAACCCAATACTGCCAAAAAAACACCATTGTAATTCCTGTGATAAAAGTTTTCTTTGGTACAAAGATTTGCTGCGacataaaaaaaaccatcaaaacaACGAAAGAAAATTCGAATGCACGTGGTGTTTTAGAATATTTATGCGAAGCGATAATTTAAAGgttcATATGAAAGTTCATCAGAATGCCAACCATCTTTTACTCCCTGACATCTATTACCTAGCTAGGCCAAATGGCACAAAAATAGCTCAATGCAAGCATTGTGACCAAAAATACTCCACTATTTACGAGTTACTTGAGCACATACAAATGATTCATTTAACATATCAACTGCCAGGCACAATTCCGAATCCAACTAGTTATTCTATTACAAACGCTTTGGGATACGAGATGGATATCGAAGATTCCGAAACGGAAAGGGAagaaacaacagaaaaatatatttgtgaAGTTTGTGGAGCACAATTTAATCGTCGTTTCAAGCTACTACAACATCAGCAATCGCTACATTACTCTGACAATATTCCCCATAAGTGCAACCAATGCAGCTTCAAATGTGTCTCCGAGGCTGTGCTTGGCTATCACATGCGAACACAATGTAAGAATGCATTGAAGCAGTTTTGCTGCAGCAAATGCACTATGCGATTTATGTGGGAAGAGAATTTagaaaatcatgaaaatttAATACATGATAGTCGTCGAACGCACACCTGTGGTGTATGCAAACAGGATTTCGCAACTCACCATGATCTTAAATCTCACAATGATTGCAAGCCACCAATCgaaattaaaatctttgaatGCAATCTCTGTAACCGTAAATATAATCGAAAAGATAGACTGATGAAGCATAAAAAAGTACATAGTACAGGACCGAAGGAAGCACAAGTTAAAAGCACTCAGTCAACAGATAAGAAGTTCTTGTGTGCATTTTGTGGGAAGGAAGTTTCGAGTTCTTCAAATTTAGTTATACACATGAGGCGACATACGGGTGAAAAACCATTCAAATGCGAATTTTGCAATAAGGGCTTTCCACGGTCTTCAGATTTAAGTTGTCATAGAAGAACACACACTGGAGAAAAGCCACACAAGTGTTTAGACTGCGGCAAGGCATTTTCGCGTTCGTATAAATTGCAAACACACAAACGTGTTCATTCGGGAGAACGGCCATACAAATGTTCATACTGTGAGAAGAGTTTTACTCAATCTAATGATTTAACGCTTCATGTACGAAGGCATACAGGGGAGAGACCATATATATGCGAGATTTGTGGTGAAAGATTTATACAGGGAACAGCACTAAGAAATCATCGAAGAATGCGGGGAcattatgaaatttaa
- Protein Sequence
- MICNYDSASNVHNLRSHIVSHKNLELVEDLGNSSVVKRFYPDKGLKEVILLIKDQIEENKLGKLYSIINENTFEMGISDSDESDPDLNHQYNCEVCNESFNRKHKLMTHQANEHSFQECPYKCGKCKLKFTCQEIFKSHLKHHCENPDKEYICRKCPGRFTWPTNFENHECRKRNMKATELKKKSTACEVCEKVFTCLRDLRIHKKTHIPGDKSRNCLICGETFFRPQDLRCHLKTHSKNGETDVNFENCEFVTSFYPDAEKSVITNHIRICFRENRLWQFYMVVNKFGLELTLSDSDSEVEKQTTEETSETYICELCDMKFPRMQAILQHQYDHGPTVNNFPNKCDNCKEQFVCEALLRRHVRSECLNPYRKHACSKCGIQFTWKINLDAHLCVIHEKSSEDNKTCEICGKKFIWLKDLHRHKRTHVPDGKKFECIVCEKKFNRKDNLRAHMKIHAIDYKQKPNTTIKWEQQDENMCRPHGEKIIQCKICFSKHNTIRDLRAHLLTHKNPNTLGQKESNIMALSMLLYNKQMDLRTLSQTISKDLTCGTNDHFYSITNEMGYELNLIDSETCTDMESNDDDDDDRNRNGVDVSKGYICKLCNRTFDRKFKIFEHQKNEHLWMELPFECVHCSAKFVCESLYRHHIQYNCENAEKQFKCKRCPLKFMWKDNLKIHEKYLHDKNPILPKKHHCNSCDKSFLWYKDLLRHKKNHQNNERKFECTWCFRIFMRSDNLKVHMKVHQNANHLLLPDIYYLARPNGTKIAQCKHCDQKYSTIYELLEHIQMIHLTYQLPGTIPNPTSYSITNALGYEMDIEDSETEREETTEKYICEVCGAQFNRRFKLLQHQQSLHYSDNIPHKCNQCSFKCVSEAVLGYHMRTQCKNALKQFCCSKCTMRFMWEENLENHENLIHDSRRTHTCGVCKQDFATHHDLKSHNDCKPPIEIKIFECNLCNRKYNRKDRLMKHKKVHSTGPKEAQVKSTQSTDKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGEKPHKCLDCGKAFSRSYKLQTHKRVHSGERPYKCSYCEKSFTQSNDLTLHVRRHTGERPYICEICGERFIQGTALRNHRRMRGHYEI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01522834;
- 90% Identity
- iTF_01522834;
- 80% Identity
- -