Vina017343.1
Basic Information
- Insect
- Volucella inanis
- Gene Symbol
- -
- Assembly
- GCA_907269105.1
- Location
- OU026155.1:2900478-2911003[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.011 1.8 10.2 1.0 2 23 15 36 14 36 0.97 2 28 0.36 60 5.4 8.1 1 23 42 65 42 65 0.90 3 28 0.00014 0.024 16.1 0.6 3 23 70 91 68 91 0.94 4 28 0.023 3.9 9.1 0.2 2 21 100 119 99 120 0.92 5 28 4.2e-05 0.0071 17.8 0.8 1 23 128 150 128 150 0.97 6 28 0.0028 0.47 12.0 2.1 1 23 156 178 156 178 0.97 7 28 0.00055 0.092 14.2 2.6 1 23 184 206 184 206 0.95 8 28 1.9 3.2e+02 3.1 4.7 2 22 213 233 212 233 0.93 9 28 1.1 1.9e+02 3.8 2.8 1 23 490 513 490 513 0.95 10 28 0.33 55 5.5 2.0 1 23 537 559 537 559 0.93 11 28 0.045 7.6 8.2 0.6 1 23 567 591 567 591 0.95 12 28 0.00036 0.06 14.8 0.1 2 23 596 617 595 617 0.97 13 28 0.0014 0.24 13.0 0.3 2 22 629 649 628 649 0.93 14 28 6.7e-05 0.011 17.1 0.5 1 23 657 679 657 679 0.97 15 28 2e-05 0.0034 18.8 2.0 1 23 685 708 685 708 0.97 16 28 0.00014 0.024 16.1 0.2 1 23 714 736 714 736 0.98 17 28 0.005 0.84 11.2 1.1 1 21 742 762 742 763 0.94 18 28 0.0019 0.32 12.6 1.0 1 21 847 867 847 868 0.96 19 28 2.4 4.1e+02 2.8 0.3 3 23 876 896 875 896 0.86 20 28 7.5e-05 0.013 17.0 1.0 1 23 929 952 929 952 0.95 21 28 0.00035 0.059 14.9 0.6 1 21 957 977 957 978 0.95 22 28 0.0045 0.76 11.4 0.3 2 23 1367 1389 1366 1389 0.94 23 28 0.014 2.3 9.9 1.1 2 23 1417 1439 1416 1439 0.93 24 28 6.7e-05 0.011 17.1 0.8 1 20 1449 1468 1449 1470 0.96 25 28 1.6e-05 0.0026 19.1 2.6 1 23 1478 1500 1478 1500 0.97 26 28 8.3e-06 0.0014 20.0 8.6 1 23 1506 1528 1506 1528 0.98 27 28 1.1e-05 0.0018 19.7 1.7 1 23 1534 1556 1534 1556 0.98 28 28 0.32 54 5.5 2.2 1 21 1562 1582 1562 1583 0.93
Sequence Information
- Coding Sequence
- ATGATGGTCCAAATAACAACAGACAAATCTGGTCCCAAGCTCGTCTGCCACATCTGCAACAAAGCTTTGATGTCCCTCAATGGATACATAAAACACTTAAAGAAGCATGAACCACCAGGTGGGTTCTGTTGTAATTATTGTGAAGAATGCTTTTGCCTCGAGGACCTTCTAAAGAAACACAAAGATGAAAAGCATAAAGTTCTCGCCTGCCAAATATGTCATGAAACTTTTACCACTCCACAAGACTACCGTTCACACATAAAAGACATCCACAAAGGTGTTGATCGCCTAATGTCTGTTTGCGAAAAATGTGGAGTAGAATTTAAAACTTCTCAAGCCGCTAAGAGACATAAAGAGACACAATGCGGACAAATAAAACCACATCCCTGTGATGAATGTGATATGGCCTTCTACACCAAGTACAACTTGGCCGAGCACAAGAAAATCCACAGAGGAGAGAAGAAATTCTGCTGCAGCTATTGTGGTAAAAGTTTTCTTAACAATGGTCGACTGGTGATACACGAGCGAAGCCACACTGGAGAGAAGCCCTATAAATGCGATGTCTGTGGAAAATGTTTTGCACATCGCGAAAGTATTGTTACGCATTCTTCAATCCACACTGGAGTTAAACTCGTTGTGTGTAAATGTTGTGGGGCAAGGTTCTCATGTCATTCCAATTTAATCAAACATCGACGAACGAGGCCGGATACCTGTGGTTTAGCTATTTACGACTCCACTAAGGAAACCAAACGACACAGAAGTTCAAGAATTCCTGCGAGTTTAATGTCGTCTGAGATCAAAATCGTCAGagcaagtaaaattattaatccCAATCAAGAGCAAAAGAAGCCTAAAGCTCCTACTTCCAACGTTTCAAAACCTAAGAAATCCATGGATCCCAAACCAGACACCGATGAAGAGGAAGACATCGCTAAGCTGCTAACACTCAGTCAAACAACAGCAGGATCAGTCAACCTAGTGGAAACAAATATAGAAGCAATCGCAACGCCTAAATGTGCCTACGAATCTGACGACAACCATGACGACCCATCATATGAGAGCCCGATGCAGTCGGATGACTCAAGTCATAGCcaaaaattttatgacaaaCCCACAACCGAAAATGAACTTTTCATCGACACTTCACTGAAGGAAATGGAGAAAACTCCAGCTGAAGAAGATTTCTTCACTGAAAAAGACAAAATACTGGACGACCTATCCACCGACGAAGGTATTACAATCAATAACGAATCACTCTTCGAAGTAGACGAGCAATTGCCAAAACAGAAAGAGGACAACTACCCTCCACTGAAGTCTTGTCGTGTAATACttacaaaaatcgaaaaagatatCTCCCCACCTAATCCACAAGCGTCTACTCATTTGAAAGGAAACACCAAACCTAAATTAAAACGCCACCGTTCAGCCTTACGAAAGAAGCTTCGTATTTTCAAGCAGGACCGCACCTATGAGTGCAAGTTTTGCGTAAAGGTCTACCACATTCGAAAACCCTACGAAAAACATCTACGCGATTATCACAACAAAACGGAAGAAGAAATCCGCTCCATATTTAAAGAAGAGGAAGACGACATTCCTGCTGAACTGATACATCGTTGCCCCATATGCTCGAAGGTTTATCTCATGGAGAAGCGTCTTAAAACCCACATCACCTATCATGGTCCCGATGGTAGCCTCATTCACAAATGTCCGAGCTACTGTAATATCTATTTCAACTCCAAAGAGGAAGCCATGGAACACGCCAAAATTGAGCACAAATCAGCTCTTTACTGTGAAGTCTGCGACAAGTTTTCTCCATCCCCAGAAGCTCTTAAAATTCACAAGCGAACCCATTTCGAGCGACGAAAACAAATGGACCGGAATCTTATCTGCGACAAATGTGCTAAATCCTTTGCCAGTCGAACGTCATTAAATGATCATACACGATCGAGCTGTGGACAGAATCCCCTATATCAGTGCAATATTTGTGATAAACGCTTCAGCACGGCGGGGATTTTGAAAACCCACACACTTCTGCACAAGGATGAGACGCCCTATGTGTGTGATAAATGCGGTaaagcgttcaaaattcaatcCCAGTACAAGACACACCTGAAGTACAAGCATACAAACGATAAGCCGTTCAAATGTGAACTCTGTCCGAAACAGTATCCCTACAGGGAGAGTCTCCTTACACATATGGCCATTCATACGGGATTGAAGCGATACGCCTGCAATGGATGCAGCAAACGATTTACATGTATTTCAAACCTTCAAGCCCATCGAAAAGTGTATGCTGATACATGTGGATTGCAACCGCTCAACTCGAAACCCAGCCAATATATCGGGATGCAGAAGGCTGAAATCGAAGACTTCTTACACAACTGCCTAGAATTACCAGGGCGCAGCCGGAAAAACACATTGAATTTGctAACTCCAAAAGAGGAGCCTCAAGATGAAGATGACAACAAATTAAGTCTCTTACATTTCCGCACCCCATCACCTCGTACGCCACCACGTACATTATCTCCTAATCCAAATTTCCAATGTGGTACCTGCAAACGTAAATTTAATAACTCCCAAAGTCTTGTCGACCACAAACGTCTACGATGTCGTAACACAAATGCCTGCCGCTTCTGTGGGCAAATTTTTCGGACTTACCTTATTCTTCAGGATCATGAACAGCAGCATAAGGATAAGGGGTCCCCAAGTAAGGAACCGAAAAAAACGTCTCCATTACAACCTAAGGGTGGGTCGAAGCCTCCAGTTAGACAACCTAAAGTAATTTATATTTGTAGAGTCTGCAACATGTCATTCGTAACGCAGAAGAGTTTAAATAAACACTACAAAGACGTTcataatatttcaaagtacaTCTGCAATCGGTGTGGTAAATCGTTCGGTGTAGCTGCACATTTCAAAAAGCATACAAAAGGATGTACAGAAGATGTCGAAAATGCTTTAGAAGGCTTAGGTATTTCTACAACTGATGTTGTTCCGGTGAGTCTTGTTCCGGTGAGTGTTGTTACGGCAAATATTATAACGCAGAGCGTTGTTGCTGCAAGTGATGTTTCCATCAAAGAAGAACCGGAAGATTACAGTGATATAGATAACAATTTTACGCGTCAGTTACTTAATGGATCCACTATTGTTCCTAAAGtTGAACCTACAGAAACAGAGGAAATGAGTATGAATGCTTCgggtaaaaattttgaaatccaaacaGGAGATCCTATAGATACTATACCAACAGATTGTATAAAAGAAGAACCCACTGACAATGTGACAGAATCACCAAGCAATGATTCGTCACTGGATTACGAAGATCTGATTCTAAAAGAGTTGATCGATCGGAAAGCCAAATCGATTGCAAGAAAAGCCTTAAATACATCAATAAAATCCTCGAAAGGCTTAAATGGTTGCAACAATGGAGTTACTTCTCAAATTGAATCTCCTTCACTTGAAAATACAGATTTTGAAAACGTTATTGCAACAAATACTCTTGCTAAAAACACAGGAAAAGATCCTCTTGTAACTGAACAACGAATGAAAGCTATTATCAATGAAAACCAATTAGGTGGTATTGTATCTGCAAATAAATTAGGAGTCTGTTGCATTACAAATCAATCAGATGAttcaaaaactataaaaacagCATCGAAATTATCAACACCAATTGTAAACCAATCAACCGGTGTTCTGGTCACATCTCCACTCCAAACATTACAAATCAAGTCTGAACCCCATCCGGTAAAACGGAAGTCAATCAACGAGTCACCAATAGATTCATTTTCGATTCCGAGTTCCACCTCCCCGTCTAATTCTCAACAGGGCAGTGATATCGAAATAATATCTGATTCTAAATCTTATTTCCAAAACAAAGCAGAAGTGATAGAAAGCCTAAAGGAGGAATACCAGAAGGCGAAAAAGAGAAAACTCGGCGAGGGATTGACAAACGATGCCAGCGAACATTCATTACCATCTGTACAGGCCACCGATAAGATGGCAACTCCATGTTCGGTGTTCTTCCCTCTATATGGTGACTCAGAATCCTACCACGAAGCTGCTCGAATGTTAGATAAGGCTTTTCGCTACTCATGGATATGCCCTTGGTGTCCGCGTCGCTATATTCAACGGCATGCATTTTCAAAACATGTATCGAGTGTTCACTGTAAAAACGAACTTGATATTCAGGATTTGCTTTTTGAACTCAGGCCTGAACCCGCTCAAGATGTTATGCCTGaatcgTGCTACTGCCAAATCTGTCGTGTGACATTAGCCGATCCAGACTCGTTGCAGAAACACAGGAATGAATTCCACAAAAAAGACAGCACACCCAAAGTACAATTCAAGTGcgaaaaatgtggaaaattctGCTCCACACGGAGCACTTTAGCGGACCATATTGAGGCCGATTGTGGTAGAGAGCCACAATACATATGCAAGATCTGCGATAAGAAATTCTACACAAAAAGCACACTGAACTTACACAAAACTATGCATACAGGCGTGTTGCCACATCGATGTGAGCACTGTGATAAATGCTTCCGGACTAGAGGGCAATTAACAGTTCATACGAGAACACATACTGGCGAACGGCCGTTTCCTTGCAAGGTCTGTGACCGACGATTCACCCATCGGGAGACACTCATTGCTCACCTTTCACGTCACATTGACATGAAACGCTACAAATGTTACGGCTGTGATACGTTCTTCTCGTGCATTTCAGGCCTTAAAACACACCGACTCTCTCGTATGAGTACCTGTGGACAGTTCAGATTAAACGCACGCCCTGTCGGACCTCGAGTTCGAGTGATCAAAGGCAATGTTATCTTTGAACCGCAACCCAAAATCAATCCCTACTTTCGACGATATGACCTTAACTGCGATGAAAACAGCCAAAACACAAATGAAAATGGTATCTTCCAGAAACAAAACCAGGAGAACGTAAAGGATCTcgtaaaaaataatgaaattgtcTCAATAGCACAGAAGAGCTAA
- Protein Sequence
- MMVQITTDKSGPKLVCHICNKALMSLNGYIKHLKKHEPPGGFCCNYCEECFCLEDLLKKHKDEKHKVLACQICHETFTTPQDYRSHIKDIHKGVDRLMSVCEKCGVEFKTSQAAKRHKETQCGQIKPHPCDECDMAFYTKYNLAEHKKIHRGEKKFCCSYCGKSFLNNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGARFSCHSNLIKHRRTRPDTCGLAIYDSTKETKRHRSSRIPASLMSSEIKIVRASKIINPNQEQKKPKAPTSNVSKPKKSMDPKPDTDEEEDIAKLLTLSQTTAGSVNLVETNIEAIATPKCAYESDDNHDDPSYESPMQSDDSSHSQKFYDKPTTENELFIDTSLKEMEKTPAEEDFFTEKDKILDDLSTDEGITINNESLFEVDEQLPKQKEDNYPPLKSCRVILTKIEKDISPPNPQASTHLKGNTKPKLKRHRSALRKKLRIFKQDRTYECKFCVKVYHIRKPYEKHLRDYHNKTEEEIRSIFKEEEDDIPAELIHRCPICSKVYLMEKRLKTHITYHGPDGSLIHKCPSYCNIYFNSKEEAMEHAKIEHKSALYCEVCDKFSPSPEALKIHKRTHFERRKQMDRNLICDKCAKSFASRTSLNDHTRSSCGQNPLYQCNICDKRFSTAGILKTHTLLHKDETPYVCDKCGKAFKIQSQYKTHLKYKHTNDKPFKCELCPKQYPYRESLLTHMAIHTGLKRYACNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSQYIGMQKAEIEDFLHNCLELPGRSRKNTLNLLTPKEEPQDEDDNKLSLLHFRTPSPRTPPRTLSPNPNFQCGTCKRKFNNSQSLVDHKRLRCRNTNACRFCGQIFRTYLILQDHEQQHKDKGSPSKEPKKTSPLQPKGGSKPPVRQPKVIYICRVCNMSFVTQKSLNKHYKDVHNISKYICNRCGKSFGVAAHFKKHTKGCTEDVENALEGLGISTTDVVPVSLVPVSVVTANIITQSVVAASDVSIKEEPEDYSDIDNNFTRQLLNGSTIVPKVEPTETEEMSMNASGKNFEIQTGDPIDTIPTDCIKEEPTDNVTESPSNDSSLDYEDLILKELIDRKAKSIARKALNTSIKSSKGLNGCNNGVTSQIESPSLENTDFENVIATNTLAKNTGKDPLVTEQRMKAIINENQLGGIVSANKLGVCCITNQSDDSKTIKTASKLSTPIVNQSTGVLVTSPLQTLQIKSEPHPVKRKSINESPIDSFSIPSSTSPSNSQQGSDIEIISDSKSYFQNKAEVIESLKEEYQKAKKRKLGEGLTNDASEHSLPSVQATDKMATPCSVFFPLYGDSESYHEAARMLDKAFRYSWICPWCPRRYIQRHAFSKHVSSVHCKNELDIQDLLFELRPEPAQDVMPESCYCQICRVTLADPDSLQKHRNEFHKKDSTPKVQFKCEKCGKFCSTRSTLADHIEADCGREPQYICKICDKKFYTKSTLNLHKTMHTGVLPHRCEHCDKCFRTRGQLTVHTRTHTGERPFPCKVCDRRFTHRETLIAHLSRHIDMKRYKCYGCDTFFSCISGLKTHRLSRMSTCGQFRLNARPVGPRVRVIKGNVIFEPQPKINPYFRRYDLNCDENSQNTNENGIFQKQNQENVKDLVKNNEIVSIAQKS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -