Vina030359.1
Basic Information
- Insect
- Volucella inanis
- Gene Symbol
- -
- Assembly
- GCA_907269105.1
- Location
- OU026157.1:70624426-70625047[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-08 1.8e-05 25.4 0.0 1 39 14 51 14 57 0.92 2 2 6.2 8.5e+03 -2.4 0.0 3 10 57 64 55 65 0.80
Sequence Information
- Coding Sequence
- ATGCCTAACCCAAATAAaggaaagtataaaaaaaagtactcgGAGGATGACTTGATGAAAGCTGTAAATGCTGTTAAGAATGGAATGACCAAGAAAGAGGCGGCTAGAGTCTTCAAAGTGATTAGAACTACCATTCAGTCGAGATTGAGTGGATTTCCTCGCAGGAAGGAAGACATTCAAGCAGCTGTAAAGGATTTCCTTGATTCATCCAACAGAAATGTTCCCTTTATTGACAATAAACCAAGTAACACATGGTACAAGGCCTCCCTAAGAAGACATCCTGAGATTGTTGCTAGGACTCCGGAGGAAGTAACAGACGCCAGCGCCAGAGTACCAGAAATAGACATTCGCAGTTGgcttactaaaattaaaaattacatccatGAAAATGAACTTTGTGATGTTCTTAATGATCCAAAACGGCTTTATAATGGAGATGAAACGAATTTCCTACTTTGCCCAAAGATTGCAAAAGTAGTTGCACCCAAAGGATCAAGAAATGTTTACAAAGCAGAAAGAGACCCGCCTAAGAAAATTTAA
- Protein Sequence
- MPNPNKGKYKKKYSEDDLMKAVNAVKNGMTKKEAARVFKVIRTTIQSRLSGFPRRKEDIQAAVKDFLDSSNRNVPFIDNKPSNTWYKASLRRHPEIVARTPEEVTDASARVPEIDIRSWLTKIKNYIHENELCDVLNDPKRLYNGDETNFLLCPKIAKVVAPKGSRNVYKAERDPPKKI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00688545; iTF_01522524;
- 90% Identity
- -
- 80% Identity
- -