Vina024769.1
Basic Information
- Insect
- Volucella inanis
- Gene Symbol
- Clic_1
- Assembly
- GCA_907269105.1
- Location
- OU026156.1:60610501-60632773[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.3e-13 1.2e-09 38.8 0.0 3 41 167 206 165 209 0.90 2 3 1.9 2.6e+03 -0.8 0.0 28 37 239 248 238 253 0.85 3 3 2.4e-09 3.3e-06 27.7 0.0 3 39 277 313 276 318 0.86
Sequence Information
- Coding Sequence
- ATGTTCATTTCGGTCTGTGATAAGGCATTTGATCTCATCACCGTCACGCATTTTGATATGACCAGTTGTCGCACGCTTAAGGTTTTGCACATAGTCGTGGCGAAGgatgaaataaaaaatgtcgaAGACCTCACCACAGTCGGTACAGATTTAAAGAAAGTTAAAGAAGAACCGATACCACTACTACCACTGACGCCAGTTAAATCGGCAGATGGCTCTGTTCCAACAAACGAACAGTTTCTGATATTTGAACTAAAGTCCAATACAGAACCGATGTATAACTACGTTATAACACAGGTAAAGCCACTACCTCGAGGTGATGGAGATCTCAAAAAGGAGATTAATTCTAGCTCTGTTGAACCTCAAAAGAATCAAAAGGATCAAAGTCAGCAAAGTCTCCCTCCATATGTGATAAGTGTACAGATACCAGTAGAAGAGGACAAAGATGAAgccaaagaaaattcaaattcggTAAAACTTAAACGTGCCCTTCGGCGGAAAAAGCTCGCAGAGGCCTTAGACGCTGTAGTCAATAGGCAACTAACAATAAGTAAGGCTGCCAGTGTCTTTGAGGTGACCAAAAGTACTCTTTGGAAAGAGGTGAACAAGTACACAAACCATCGGCGAAAAAAAGTCGACGAGGAATTGAATAAAAGGATCGCTGATCGTATTTGTTCGGGGGAATCTCTATCAGTCATTTCAAGATCCCTGAAAGTTGCCAAATCAACTTTACATCAGCATAAAGTTCGACTAGCCCAACGGGGCCAACTACCGCCAAACGTGCCACTTAAACCGCCAACTCATCCTGCGGAGAAACTCGCAATGAAAGAGCGCATCATTCAGGCGTTTCGTGGTTGTCGTGTCAATGGAATGTCAATACGTTTTgcagcaaaattcttctcaaTACCACCGTCAACATTGTGGAAGCATATACGCCGTTTCCAGGCCTCTCAAAAGCGTTTTGCTGATATACACCAGGAGTCTATAGATGTCGAGCCGATAGAAGTCAAATTAGATATTCTCGATGAGAATAATGATGAGGATGGGAATGTGAATGAGGATGAAAACGCCGAAAATGAGGAAAATGAGCAAAATGAGGAGCTGgcaTCCACCATCGATGGAAGACGCAAGGGAGCATGCCTTTTCTGTCAGGAGTATTTCATGGATTTGTACCTGTTGGCTGAACTGAAAACTATAAGCTTAAAGGTCACCACAGTTGATATGCAGAAGCCTCCACCAGATTTTCGTACCAACTTTGAGGCAACACATCCGCCAATTCTTATTGACAATGGTCTCGCCATCTTGGAGAATGATAAAATCGAAAGGCACATCATGAAGAACATCCCCGGTGGATACAATCTCTTTGTGCAGGACAAGGAAGTAGCCACCTTGATTGAAAACTTGTATTCCAAATTGAAGTTAATGTTGGTCAAAAAAGACGAGAACAAAAACAATGCTTTGTTAACACATTTGAGGAAGATCAACGATCATTTGGCATCACGTGGCACTCGCTTCCTGACGGGCGATACTATGTGCTGTTTCGATTGTGAGCTCATGCCAAGGCTACAACATATTCGAGTGGCTGGAAagtattttgttgattttgaaatacccACTCATCTGAGAGACTTGTGGCGTTACATGTATCACATGTATCAATTAGATGCCTTCACGCAGTCCTGCCCAGCCGATCAGGATATTATCAATCACTACAAACTGCAACAGgCTAAAGGTGATGTTAAACAGGTATGTTTAATGATGAACAAGAAGTGTGATTAG
- Protein Sequence
- MFISVCDKAFDLITVTHFDMTSCRTLKVLHIVVAKDEIKNVEDLTTVGTDLKKVKEEPIPLLPLTPVKSADGSVPTNEQFLIFELKSNTEPMYNYVITQVKPLPRGDGDLKKEINSSSVEPQKNQKDQSQQSLPPYVISVQIPVEEDKDEAKENSNSVKLKRALRRKKLAEALDAVVNRQLTISKAASVFEVTKSTLWKEVNKYTNHRRKKVDEELNKRIADRICSGESLSVISRSLKVAKSTLHQHKVRLAQRGQLPPNVPLKPPTHPAEKLAMKERIIQAFRGCRVNGMSIRFAAKFFSIPPSTLWKHIRRFQASQKRFADIHQESIDVEPIEVKLDILDENNDEDGNVNEDENAENEENEQNEELASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLTHLRKINDHLASRGTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLRDLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQAKGDVKQVCLMMNKKCD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -