Basic Information

Gene Symbol
JARID2
Assembly
GCA_907269105.1
Location
OU026154.1:65601034-65640371[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.3e-22 1.8e-18 67.7 0.0 6 89 1785 1866 1780 1866 0.92

Sequence Information

Coding Sequence
ATGTCGTTCGCTACAGAGCATATTCGGCAGCCTGATGAACATTGGGATGACGTTATTTTCTGTGACGAAACTAAAATAATGCTGTGTTATAACGATGGAGCCAGTAGAGTGTGGCGGCAACCTGTAAAAGCCTTGGATAACAGAGATATAATACCAACAGTCAAATTTGGTAAATTGTCCGTTATGGTGTGGGCTTGTATATCAAGCGAAGGAGTTGGAGACCTAGTTTTTATTGATGGTCACATGGATGCGAAGCAGTACTTAAGCATTTTGCAATCTTACCTACACAGTAGTGCCCGTAAATTTGTATTCGACGGCGGTGATTTTACCACAaaaccaaaattcaaattttaccaggacaatgatcccaaaCACAAGGAGCATACAGTTAAGATGTGGCTGCTTCACAACTGTGCCAAAGTGCTTGATACACCTGCCCAGAGCCCAGACCTAAATCCTATAGAAAAAAGgACCAAGGTGCAAGCTCAAAGAAAATTCGCTCAAGGTCAGAGTGCGCCAGCTTCCTCATACGGTTCTGCATTGGCTTCATCTTCAGCTGCAACTGCTTGTGGTAGTGCttctttgaataattcattatCTCAAGAAAATCGAGAACCTCCAACAGAAATTTTACCTAATAAAAGGCCAAAAACTGAAGATTTTCTTACGTTCCTCTGCTTTAGAGGTACATCTGCGTTACCAGCTCATTTAGATTTTCTAAATCAAAACACACCTCAGCCTGCAAAAAATGAATCTCCTGTCAATTTAACTGAAAGTACGAAAGAAGTTGAAGAATCTTCGgcaaaattttcttctcaaaaatcTACAAGATCAGCAACCATAAAACGGAAGGAAAAGGATACTGGTGTTGATGAAAGTTCCACGTCTACAGTAAGCTTAAAAAAACCCGAAAGCAAAAAATCGCTTGGAAAGAAAAATGCTGAAACAAAGGTTATGGCTTTCGCAGTAAGAAAAAGAGCCGAACAACTTACTGAAGGCAATCGGCGTGGTAGGCCAGCAGATAAGTCcaaagaaaagttaaataaatccAATGGAGGCAGTAGGCGATCATTCAGAAACAGGGATATAAACAAATCAATTGACGAAACCGATGATATTGAAACGCAGAATAATGATGTCGAAACAGCATCTATGGAGAGTGAACAAGATGTTATAAAAACTGATAAAACTTCTCAACAGAAAGGGAAACGGGGAAAATCCATAAATTCGGgtaggaaaaagaaagaagcatTACTAACAGCCACACCTATTCAGGACCCATCGATTGGGCAGTCAGAACAAAAAGCAGAACCTTCATCATCACCAACACAAGCACCCATATTCGCAACTCAAACAAAAAGTATACAGTCCAAAGAAAAACAGGTAAAAAGACCGCGCCAAAAAGAAGCTCCAATATTTGTTCCATCACCTGAACCGACAGGGCGTATGACACGTCAGCGGGCATTTTTTGAACCAGTTAAAGTAATACATCGGGAGGAAAATGATGatgttcaaaagaaaaaggaaaatgacGAGAATACGTTGATTGAATTATCGACGTCTATGACAGTGCAGAAGGATGATGAAAACGGATCTGGTAAAGACGTGTTTGACTTTTCATCAGAAGATGAACAACCGTTagcaaaaacaattaaactaaaaaattcgaaaataggTTTAGCAAAGAAATCTTCTCCAAAGAAATTAATTGCGAAAAGTAAATTATTGTCAAGTAATGATGACACAGAAAACATAAAAGGCAAACATAATTTAGTTCAAGTTGATCAAGAGCAAACTGAAACAGTTCGAATAATGAACTTAACCGCTACTgtattaaaagaagaagaagaagaagaagaattgaaaaattttcccgAAAAGACAAAAAGGACAGCTGgcagaaaaccaaaaaaaaaattggtggaTGAGCCAGCCACTATTTCTGAGGAAAGTCCGCAGTTGTTGATTGAAActgaaaatacaaattcaaaaaaaaatgatttggaaacagaaaaactttctGAAAATGATTTAAAGAAGATAATATCAACGTCgaagcaaaagaagaaaaatgtatcAGTCCCAGTCCCACAAAATTGTCAGAGCATGGATACAACCGAAAATGAAATTCGAAGTACGCGTCCTtctagaaaaacaaaagaagctgCAACAATTTATATGGGCATTATTCGTCAAAAATTACAGCAGGATGAATTTGAAGATGATAATCTATCGTTAAATAGCTTTCCAGATCGGCCAAATGTGAAAGAAATGGAGAAAATGGAAACGGAACTAAAAAAGAACGTCGACCAAAATAGACAGTTAAAAGCAAAAGCCATCGACATACAAAATTCAGAAGAAAAGCAATCTCCAAAATTACCTGAGAAACCACCAGCAAGAAGAGGCCGTCCTCCTAAAAATGCGAAATCAAAACTAACGAAGCCTTCACAAATAGAAGGAATGCTTCGAAAAAGAGAAGATCTAaaaccagaaaataaaattgaaaaagaagatgatgaagattttCTGTTAAATGAGGAGGTTaatgaaaccaaaagaaaactCGAAAGGAGTTTTAGTGATTCAGATGATGAACCACTTGCTATAAAGTTAACAAAGAATAGTGAAAAAGACTCAAATCAGTCGAAAAAATCGGATGCTCCTCCAGTAGTGAATGCTGTAATTCATATCGATAAACGGATTAAAGAACCGAAACCAGCTCCCAAAATCTTGAATCTTTTGCCCTTAACAACACCAGTCTCTACTTTACAGTGTAATTATTCATCATCAATTGCTGTAAATTCTCCCTCATCAGATAATAAAACTAAGTTAGATAGTAAACCAAAAATGCAAAGCCCTTTAGCAACTCCTGCTCCTCCATATATTCCACGGCAACCGGTTATTAAGTCTCCTAATTCTCAGACACCTCTCTCGGCTTTACCACCTACAATTAAATATCAAACTCCTCCTACAACATATCCACCACCGATTGAAGCATATCCTTCTCCCAAAATCAATCCAAACTTTCTTACTCCGAAATTTGATAGGAACATAGACAGACGTATTGTATGCCTCGACGTACAGTCCCCACTTTCTACTTTGCAAAAAACAAGCAGCAGCTTTCCATCACCTTCTCCAGTTAAATTTGATATATCATCTCCGAAAACTCCAAGCACATCAAACGCTAAGATACCTATTGTACCCCCCGCAACGTCGTCAAATGCCGCTTCAGCAGATCCACTTAAAGATGAAGGAAGCATTCTTGCAGCTAACTTAATGCCAAGTAAAGAAGAGTCTGGCAAAATTTTTGGAATTGCTAGTGTAAGTTTAGCACAAAGCTCAGGTCCAGATAATACAAAATGTACACTAGGCAAGTGTGGATCAATACATAAACCGGTGTTAGGGCCCGTAGTTCCAACAGAATCATATTTGGGTGAACAGCTTTCTAGTAAAGAGCGACGTAAGGCCAAAGTTAATATGACACATGAACAAATTCAGAAATGGTTAATTGAATGTTCTTCAAATCCCGATGAAATTCAAGATGATTTGGATGACGATTTTGATGATAACCTTCGTCCTAATATATATGCAACAACTCCTCCACCTACAAGAGATGACAAAGAGAGTACTTCGTTTAGTTCATCTTCAAAGACCACAAGAGATCCCGGCAAGAGTGAAAGTGCATGGTCGGGTAAAGGTCCTTCTTTGAAAGCAACTCCAGTAGTTGTTCCTAAGGACGACCAACGACAAGAAGAATGTTCAATATCGCCAGATGTTGTTACCAAAGAAGTAAAAGAATCTGTTAAACCAACAACCACAAATAGAAAAACTGATACAATTGTGAAACTaaaggataaaaataaaattgaaaagacgaaggaagaaaaagaaataaaaaaggtcCAGGAGAAACTGCCAAaagaaacaacacaacaaaaaaatacgaaatcttcAAATTCGATGACGTCGGTTGCCATTTCTTCACCTCGCCaacaaaagaaagatgaaagtAAAAGCAATTtacaaatatctcaaattgcaAAAATAGGAGTTGGAACACCAACAACTCCTTCCAGAATACAGAAAAGAGCACCGGTGTACAATTCCAAATTAAAGGAATCCACCACAACGAGTCATAAGAGAAAGGTTCCGTTAACCGCATTTGGTGCTTTTTCAGCAGAtaatgaaaaaagtatttactCGTTTGATAAAGAAGAAGATGACACTAAATTGTCTTTATCAAAGCCATTCCGAAGGCAAAGCCGTAGAGAATCAATCAGCGAGGAACACTCTCAAAACGAATCCTCGTCAAAAAGAAATatagcagacaaaaaaaaaggaaatgcatCACAAAATAGTGTTTCCGTTACACTCAGCCCTGATGAAAAAAGTAAACTTGTTAAAGTTAGCCTTGAGTCGGAACAAAGCAAACCTCCAAAAGCTTCAGAGAAAcctaatgaatttaatttagctGACTCTGATTctgatatacatacattttacaTACCCCTTCAAGGAGCTGGAGTCGGAGGCGGAGAAGGCAAATCAGATGTCATCCAGGGGGTCGCCGTTAAATTAGGTCGAGAGGGGCCTGAGGGTCCGAAACAGAAAGTTGTTATGCATGCGACTTTAGTGACAAAATCTCAAATGGGATCGAATCTGAAACCGCTTCCTGACTCTATGAACGTTTcagaaatagtaaaaaatttactCAGCTCGGGTAATGTAACAAATAATAAGGATTCCAGTTACCTTACCCCAACAAATTTCACAGGCCCTCAGGTATTGCCTAATACACTGGGGGTAGCTAGTCCGCAGCAAAACACATCTAATGCACAGAATACTACATCGGCAACATCTTCATCAATGGCAGTAGGCAGCTCGAAAAGTGTGCCTGTTGGTACAGTTCAACCTAGGTTCAAATCAACTGAGTGTTCGACAACACAACCAAATCATCCATCTGGATCTGGTGGTGGAGGTGGAGGTGCTCTAACACGTGTTAATTCAaattcttctctcttctccggTTCAAATAAATCTCGGGGTCAATCTAGTAAAAAGATTAAAGATGACGCTCCTATTAAAATGTGCAATAACACAGCTTTTCCCCGTCATGATGATCCAACACAAATGGTAGAAGCTCCTATATTCCGGCCAACGGAAAAAGAATTCCAAGATCCCATGGAATTCATTGATAGAATTACTCCGATCGCAGCTCGTTTTGGAATTTGTAAAATCATACCACCAGCTAGTTTTAAGCCGGAGTGCAGAGTGTCTGATGATATGCGTTTTACCGCATATAATCAATACGTACACAAAATGTTACATAGATGGGGTCCTAGTGCAAAGGAACTTAGTgcaattaagaaatatttggcaaCGCAAAGCATTGTAATGAATCATCCACCTTGGATTGGGGGAATGGAAGTTGATCTACCAAGACTTTATCACACAGTTCAAGAATTGGGTGGCCTCAAggaagtaatcgaaaaaaagaaatgggcTCGTGTAGCGGAAGAAATGTGCATTCCAAAGTTAGCGCAGGATCGCGTAACTAAGCTAGAtgatatatattgtaaatatctTCTTCCATATGACACATTGTCTCCAAATGAGcgtcaaaaattatttgacGAAGTGGAGGCCGACTGGGCTAAACGTGAGGCCAGAGCTAGACGAAACGCTGATCGTTTTGTCAACACCGAAAGTGTAAGTAATGAGGACGACGACGTTTCAAGTGAGGATGATGAAGAGTCAGAGGAAGAAGTTGACGGAGTTTCAATGGAATGCATTGTAAAGGGTCGTAGCATGCCACTTAGTCAGTTTTTCCGCATTGCTCGAAATACGATGTCTTTATGGTTTAAAAATACCGAACCGTCTGTAACTGAAGTTGAAGCTGAGTTTTGGCGTCATGTTGCTGTTCGTGATAGTCATGTTTGTGTGCATTCCGGATCAATTGATTCAAGCGGCTGGGGATATGGTTTTCCGTCGCCAGGACCAAAGGGCAAGGGATCTGTATGCGCTCGACATCCATGGAATCTAaaagttttaacaaataatGCCGGGTCAGTGTTGCGCTCGCTAGGACCTGTAATGGGAGTAACAGTACCAACCCTGCATGTTGGTATGCTATTTAGCGCTTGCTGTTGGTATCGAGATCCTCATGGATTATCGTGGATTGAGTATCTTCACACAGGGGCAAGTAAATTATGGTATGGGATACCCGATGATCAAAGTGCAAACTTTCGAGCAGCATTAACTTCGCTTATACCCACACATtgccaaaataaaacaatttggtTACCTTGCGATACAGTTATGGTTCCTCCTCACATGTTAACTGATCGGGGAGTATCTCTTTGTCGAATAGAACAAAAACCAGGGGAATATGTTGTAATTTTCCCGCGAGCATATACTTCGAGTGTCGCAACTGGCTATGTTGTTTCAGAAAGCGTATATTTTGCTACAAGTTCATGGCTAGAACTAGGCAAAGATGACTTTAgggaTATTCACGATAGCTGTGAACCAGCCATGTTTTCTTTAGAGCAATTACTTTTTGCTTTGGCCTCTGACCAGCGCGTAACGGCTGACATCCTCTCCCAGATGTTGCCCATGataaatgaagtttttgaaaaggaAGTTGCGGCTAGAGAACAGTTAAAGGCTCGCTGTCTTCCCATTGGCACCTTTGACGCCATGAGGAAGTCGTTGAGATCCGCTCGTATGCTCGAACGCAGAGAGTCTCTGAATTTGGACTCGGGATACAAATTCACATTTGTCGATGACCGAGAGGCGGTGCTGGCCAAAATTAAACAGATTGAGGAGCTCTTGGAAGAACCTCCAAGTAAGTTGGTTAGAGCGAGAGACACTTCTCCGGAATACACTGAGGAGAAGTGTACTCTCAAACATAGGTTAATCGTACTAGCCGGGGAGTTAGCCGGAGGTACGGAAGAGGATCCGGATAGACGAAGGCGATGTAGACTACGAGGACGAGGAAGAGCCAACGTGCTCGAGGCTCGTTAA
Protein Sequence
MSFATEHIRQPDEHWDDVIFCDETKIMLCYNDGASRVWRQPVKALDNRDIIPTVKFGKLSVMVWACISSEGVGDLVFIDGHMDAKQYLSILQSYLHSSARKFVFDGGDFTTKPKFKFYQDNDPKHKEHTVKMWLLHNCAKVLDTPAQSPDLNPIEKRTKVQAQRKFAQGQSAPASSYGSALASSSAATACGSASLNNSLSQENREPPTEILPNKRPKTEDFLTFLCFRGTSALPAHLDFLNQNTPQPAKNESPVNLTESTKEVEESSAKFSSQKSTRSATIKRKEKDTGVDESSTSTVSLKKPESKKSLGKKNAETKVMAFAVRKRAEQLTEGNRRGRPADKSKEKLNKSNGGSRRSFRNRDINKSIDETDDIETQNNDVETASMESEQDVIKTDKTSQQKGKRGKSINSGRKKKEALLTATPIQDPSIGQSEQKAEPSSSPTQAPIFATQTKSIQSKEKQVKRPRQKEAPIFVPSPEPTGRMTRQRAFFEPVKVIHREENDDVQKKKENDENTLIELSTSMTVQKDDENGSGKDVFDFSSEDEQPLAKTIKLKNSKIGLAKKSSPKKLIAKSKLLSSNDDTENIKGKHNLVQVDQEQTETVRIMNLTATVLKEEEEEEELKNFPEKTKRTAGRKPKKKLVDEPATISEESPQLLIETENTNSKKNDLETEKLSENDLKKIISTSKQKKKNVSVPVPQNCQSMDTTENEIRSTRPSRKTKEAATIYMGIIRQKLQQDEFEDDNLSLNSFPDRPNVKEMEKMETELKKNVDQNRQLKAKAIDIQNSEEKQSPKLPEKPPARRGRPPKNAKSKLTKPSQIEGMLRKREDLKPENKIEKEDDEDFLLNEEVNETKRKLERSFSDSDDEPLAIKLTKNSEKDSNQSKKSDAPPVVNAVIHIDKRIKEPKPAPKILNLLPLTTPVSTLQCNYSSSIAVNSPSSDNKTKLDSKPKMQSPLATPAPPYIPRQPVIKSPNSQTPLSALPPTIKYQTPPTTYPPPIEAYPSPKINPNFLTPKFDRNIDRRIVCLDVQSPLSTLQKTSSSFPSPSPVKFDISSPKTPSTSNAKIPIVPPATSSNAASADPLKDEGSILAANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTESYLGEQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDDNLRPNIYATTPPPTRDDKESTSFSSSSKTTRDPGKSESAWSGKGPSLKATPVVVPKDDQRQEECSISPDVVTKEVKESVKPTTTNRKTDTIVKLKDKNKIEKTKEEKEIKKVQEKLPKETTQQKNTKSSNSMTSVAISSPRQQKKDESKSNLQISQIAKIGVGTPTTPSRIQKRAPVYNSKLKESTTTSHKRKVPLTAFGAFSADNEKSIYSFDKEEDDTKLSLSKPFRRQSRRESISEEHSQNESSSKRNIADKKKGNASQNSVSVTLSPDEKSKLVKVSLESEQSKPPKASEKPNEFNLADSDSDIHTFYIPLQGAGVGGGEGKSDVIQGVAVKLGREGPEGPKQKVVMHATLVTKSQMGSNLKPLPDSMNVSEIVKNLLSSGNVTNNKDSSYLTPTNFTGPQVLPNTLGVASPQQNTSNAQNTTSATSSSMAVGSSKSVPVGTVQPRFKSTECSTTQPNHPSGSGGGGGGALTRVNSNSSLFSGSNKSRGQSSKKIKDDAPIKMCNNTAFPRHDDPTQMVEAPIFRPTEKEFQDPMEFIDRITPIAARFGICKIIPPASFKPECRVSDDMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPNERQKLFDEVEADWAKREARARRNADRFVNTESVSNEDDDVSSEDDEESEEEVDGVSMECIVKGRSMPLSQFFRIARNTMSLWFKNTEPSVTEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSVCARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEYVVIFPRAYTSSVATGYVVSESVYFATSSWLELGKDDFRDIHDSCEPAMFSLEQLLFALASDQRVTADILSQMLPMINEVFEKEVAAREQLKARCLPIGTFDAMRKSLRSARMLERRESLNLDSGYKFTFVDDREAVLAKIKQIEELLEEPPSKLVRARDTSPEYTEEKCTLKHRLIVLAGELAGGTEEDPDRRRRCRLRGRGRANVLEAR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01522350;
90% Identity
iTF_01522350;
80% Identity
-