Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.1 4e+04 -2.9 0.4 13 15 20 22 18 24 0.50

2 8 0.0056 1.1e+02 5.3 17.5 4 18 35 49 28 50 0.86

3 8 5 9.8e+04 -5.2 1.9 1 4 59 61 59 61 0.78

4 8 1.8 3.4e+04 -2.7 1.6 5 10 79 84 79 84 0.87

5 8 0.0015 30 7.1 7.1 1 10 90 99 90 99 0.98

6 8 3 5.9e+04 -3.4 0.8 6 10 107 111 105 111 0.46

7 8 1.4e-09 2.8e-05 26.4 14.2 1 18 117 134 117 135 0.97

8 8 5 9.8e+04 -5.2 6.6 6 10 164 168 156 175 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.1	4e+04	-2.9	0.4	13	15	20	22	18	24	0.50
2	8	0.0056	1.1e+02	5.3	17.5	4	18	35	49	28	50	0.86
3	8	5	9.8e+04	-5.2	1.9	1	4	59	61	59	61	0.78
4	8	1.8	3.4e+04	-2.7	1.6	5	10	79	84	79	84	0.87
5	8	0.0015	30	7.1	7.1	1	10	90	99	90	99	0.98
6	8	3	5.9e+04	-3.4	0.8	6	10	107	111	105	111	0.46
7	8	1.4e-09	2.8e-05	26.4	14.2	1	18	117	134	117	135	0.97
8	8	5	9.8e+04	-5.2	6.6	6	10	164	168	156	175	0.73

Coding Sequence: ATGCCGATCGTTTTGGAgcaaagaaaatcctgtttagATTCAATCCCAGTTTGTGATGGAACTTGTAACAAGACCCTACGTTGCGGCAAGCCAGCACACCCTCATCAATGCGCTAGCAAATGTCATCATAGCAATTGCCCACCGTGCAACAAACAAACCGCCGTCAAGTGTCGTTGCGGCCATATGGACCAGATGATAAAATGCCGCCAGCTGTCAACCAGAGCTGACGATGCACGTTGCAAAAAACGTTGTGTGAAGAAGCGATCCTGCGGCAAACACAAATGCAACCAAGAGTGTTTCATCGATATTGATCACATTTGCCCGATGTCATGTAACTATACTCTATCCTGCGGCAAGCACAAGTGTGATCAACCATGCCATAGGGGCAACTGTCCTCGTTGCTATCGCAGCTCATTCGAGGAATTGTACTGCGAATGTGGAGCTGAAGTGATCTATCCCCCGGTGCCATGTGGCACAAAGAAACCGCCCTGCAAGCGCCCATGCTCACGCCAACACCCATGTGATCATCCAGTTTAA
Protein Sequence: MPIVLEQRKSCLDSIPVCDGTCNKTLRCGKPAHPHQCASKCHHSNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECFIDIDHICPMSCNYTLSCGKHKCDQPCHRGNCPRCYRSSFEELYCECGAEVIYPPVPCGTKKPPCKRPCSRQHPCDHPV

Sequence clustering based on sequence similarity using MMseqs2