Vbom003600.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- stc
- Assembly
- GCA_949129095.1
- Location
- OX422140.1:21637279-21639446[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5 9.8e+04 -5.4 2.0 4 6 15 17 14 18 0.50 2 10 0.021 4.1e+02 3.5 17.5 4 18 54 68 47 69 0.86 3 10 5 9.8e+04 -4.3 1.6 5 10 98 103 98 103 0.87 4 10 0.0077 1.5e+02 4.9 9.3 1 11 109 119 109 120 0.96 5 10 5.2e-09 0.0001 24.6 14.2 1 18 136 153 136 154 0.97 6 10 0.92 1.8e+04 -1.8 0.8 6 10 183 187 182 192 0.74 7 10 5 9.8e+04 -10.6 15.0 10 18 201 210 187 211 0.77 8 10 1.8e-07 0.0036 19.7 14.2 1 16 247 262 247 272 0.93 9 10 2.8e-07 0.0054 19.1 11.5 1 16 279 293 279 299 0.87 10 10 0.56 1.1e+04 -1.1 0.6 7 12 314 319 308 319 0.68
Sequence Information
- Coding Sequence
- AtgacaacagcagcagaaacaacaacaacaaataccaaCTGCCACAACTGTGGCAAAATGCCGATCGTTCTGGAgcaaagaaaatcctgtttagATCCAATCCCAGTTTGCGATGGAACTTGTAACAAGACCCTACGTTGCGGCAAGCCAGCACACCCTCATCAGTGCGCTAGCAAATGTCATCATAGCAATTGCCCACCGTGCAACAAACAAACCGCCGTCAAGTGTTGTTGCGGCCATATGGACCAGATGATAAAATGCCGCCAGCTGTCAACCAGAGCTGACGATGCACGTTGCAAAAAACGTTGTGTGAAGAAGCGATCCTGCGGTAAACACAAATGCAACCAAGAGTGTTGCATCGATATTGATCACATTTGCCCGATGTCATGTAACTATACTCTATCCTGCGGCAAGCACAAGTGTGATCAACCATGCCATAGGGGCAACTGTCCTCGTTGCTATCGCAGCTCATTCGAGGAATTGTACTGCGAATGCGGAGCTGAAGTGATCTATCCCCCGGTGCCATGTGGCACAAAGAAACCGCCCTGCAAGCGCCCATGCTCACGCCAACACCCATGTGATCATCCAGTTCAACATAATTGCCATTCAGCAGCCAGTTGCCCACCGTGTATGATGTTCACCACGAAATGGTGCTTTGGACAGCACGAACAGAGAAAAACCATTCCATGCAGCCAGGAGAGCTTCAGCTGTGGCCTGGCGTGCAACAAGCCCTTAATTTGTGGTCGTCACAAGTGCATCAAATCATGTCACGAGGGTCCTTGTCAGGCGACAGGTGAAATCTGCAAGCAAAATTGCACAACAGTGAGGCCTAATTGCGGACATAAGTGCATGTCACCATGCCACGATGGGGACTGTCCGGAAAcagcggCATGCAAAGAAATGGTGGAGGTAACTTGCGAGTGTGGTAATCGAAAGCAGCAGCGAGCTTGTCATGATTTCGCCCGAAAATACCGTCGAATCGCCACCGTACAACTGGCCACCTCAATGGCCGAAGTTCAACGTGGAAACACAATCGAGTTGCGCGACATTCTTGGACCAATCAAGATGAACAACAACAAAGCCCTCGAGTGTAACGATGAATGCCGCACCATAGAACGCAATCGTCGCCTATCTATTGGTCTGCAAGTCCGCAATCCCGATTTGACACAAAAGCTACTCACCAAATATTCCGAATTCATTCGAAACTACGCCAAGAAAGATATAGTTCTTGTCAGATCCATCCATGATGCCCTAACCAATCTCGTTAAATTGGCCAAGGAAAGCAAGCAAAAGTCCCGCAGTCATTCATTTCCAACAATGAACCGCGAGAAGCGACAATTGGTGCATGAGATGTGCGAAATGTTTGGAGTCGAGTTGGTGGCTTATGatgcagaacccaatcggaatgTCGTGGCTACTGCCTACAAGGAGAAGTCTTGGTTGCCAGCACAAAGTATCATGTATGTTATACAACGTGAGAGTGGACAACGACGTGTTCCAGTGCCAAGCAACAATGCCTGGGGTTTTAAGAGATAA
- Protein Sequence
- MTTAAETTTTNTNCHNCGKMPIVLEQRKSCLDPIPVCDGTCNKTLRCGKPAHPHQCASKCHHSNCPPCNKQTAVKCCCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPMSCNYTLSCGKHKCDQPCHRGNCPRCYRSSFEELYCECGAEVIYPPVPCGTKKPPCKRPCSRQHPCDHPVQHNCHSAASCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACNKPLICGRHKCIKSCHEGPCQATGEICKQNCTTVRPNCGHKCMSPCHDGDCPETAACKEMVEVTCECGNRKQQRACHDFARKYRRIATVQLATSMAEVQRGNTIELRDILGPIKMNNNKALECNDECRTIERNRRLSIGLQVRNPDLTQKLLTKYSEFIRNYAKKDIVLVRSIHDALTNLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVELVAYDAEPNRNVVATAYKEKSWLPAQSIMYVIQRESGQRRVPVPSNNAWGFKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -