Vbom005301.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- topi
- Assembly
- GCA_949129095.1
- Location
- OX422140.1:44182409-44186711[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.7e-05 0.016 18.0 2.8 1 23 208 230 208 230 0.97 2 10 5.5 2.4e+03 1.7 1.1 2 23 258 279 257 279 0.88 3 10 0.14 60 6.7 0.2 2 19 334 351 333 353 0.93 4 10 0.0072 3.1 10.8 1.4 1 22 401 422 401 425 0.90 5 10 0.038 16 8.5 0.1 2 23 440 462 439 462 0.87 6 10 4.3e-07 0.00018 24.1 2.0 1 23 477 499 477 499 0.95 7 10 0.0015 0.63 12.9 1.7 1 23 505 530 505 530 0.97 8 10 0.83 3.5e+02 4.3 1.4 1 23 536 558 536 558 0.84 9 10 1.6e-06 0.00066 22.3 1.0 3 23 566 586 564 586 0.98 10 10 0.0076 3.2 10.7 1.2 3 23 594 615 592 615 0.95
Sequence Information
- Coding Sequence
- ATGAATACTAATGATCCTAGTGGTGAAGATTATCCCCATTCCGAGGCTTGGTTGGCCGAACAAATATTTTCTCATCTTAGAGATTTCAATACAGAACCTTTAAGTGACAAAGAACATATTGAATGTAACAATGGTCAAGACCAgaatattcaagaaaaagttGAAATGGGAATCCCTAATATAACTGAATTAAATGAAGCACAAAGCCATCAGGAGATTCAAGTTAAACTTGAACACCAAGAAGATATTAACGAAAATATAGATGTTTcccaaaacaaatcaaattcggAGAAACAAACCGCCGCGGAACCAGAATGTCAGGATCCAAACTCATACTCGTCTTTTGAAACCGGGCTGCAGATCATCGAATGTGCTAATTGCAACTGTATATTTGATGTAGAGTCCTTTCCCCAACACGTATGCGATTACGACGAAGACAGTAACCTAATTGTGCCTGAACCGAAGGAACAGTCTATACTGATACCACAGTCTGAGCCAATAGTACCACCATGTATACGGCTTCTACGTGAAAATCAAATTCGAATACGTCGCTTCCTCAAGGAAGAGTTGAAATACGATTTAAATGCTATAAATTCCAATTCAAAAAAGTTAGACGGCCCACATGAATGTAGCTTGTGtgaaagaaaatttgtacaTGCATCAGGATTGTCACGTCACATGGAAAAGCATGAATTAGATCTAATACCGACTTCATCGCCGGCTAACGCGAATAACGGTCTTCCACCAATCAATAATTTGAAAGTTGTTCTTAAATGTATCCACTGCGGTCGTATTTTCTTGGAACCGGATACGGCCATTAAACATTTGTGTGAACATTTTAGCCATACAATAGAGGCCGAAAATGAATTTCAGTCTGTTGCAGAGCTACCATATGAATTCTACCTTGACGAAGctttgaattttctaaaaatcaaAtttaaaaacttTGACAACAAGCCAATTGCCCATCTTAAAATGATAATATCAAGTTGTGTTTTGCAATGCGAGTTTTGCGATTATCAATTCTCTGAAGTGTATTATTTGTTCCTGCACTCAGCATGCCATCAGCCGCATAGACCTTTTGAGTGTTTTGCTTGTGAAATTCATGTTTCTACTGCAAAACAAATTTGCACGCATTGGCAGGCAGAATGTGTATTTGCAAGGGAATACTTGAAGCGAGGCTGTTTATTGCAAAAGTATTATGTTTGCAACGTATGtgagaataaatttaattcgttGGAGCAGTTGCATGAGCACAGGTACACTGCATATCATTTCTTCCCGAGATTAGATAAAAAACGTGGTATGTTGAGACTTCCATGTGAATACTGTGATGTTGTGTTTGAAACagcaaaagaaattgtaaatcatttcgaagaaaaacattataaaaataacaaacgaGATCCTGCTGCTAAATACCGTCAATACTTGTGTGATATTTGTGGAAAAACCTACACCCAATCCAGTCATTTATGGCAGCATTTAAGGTTTCATAAAGGTGTCAAACCATTTGTATGTAAGGAGACAGGCTGTTCACGTCGATTCACCATTCGTCCTGACTTAAACGATCATATTCGGAAATGTCACACTGGTGAGAGACCCTATCACTGTCTTGTCTGTGGCAGGCGTTTTTTAACTGGATCAGTGTATTATCAGCATCGTCTTATTCATCGCGGTGAAAGACGTTATGGTTGCGATGAATGTGGCAAACGATTCTACCGTGCGGATGctttaaaaaatcatcatcgAATTCATACCGGAGAAAAACCTTATGGATGTCTattttgtacaaaaacttttcgtCAGAGAGGGGATCGTGATAAACATATCCGTGCTAGACATTCTAGTCTAGATGCGAATGCTCGGCTTATGATGCAATTGCAAAAACTGCAGTTAGAGGCAACTGCCCGCAACAATAGTTCTGTGTCAATATCTAATGACGATGTCTTGATGTTGGGAAACGTTCCATTTCCAAAGAGTATGTTCCAGCCAGCTCTAAATGATATGGACGCAAGCCAAGGATAA
- Protein Sequence
- MNTNDPSGEDYPHSEAWLAEQIFSHLRDFNTEPLSDKEHIECNNGQDQNIQEKVEMGIPNITELNEAQSHQEIQVKLEHQEDINENIDVSQNKSNSEKQTAAEPECQDPNSYSSFETGLQIIECANCNCIFDVESFPQHVCDYDEDSNLIVPEPKEQSILIPQSEPIVPPCIRLLRENQIRIRRFLKEELKYDLNAINSNSKKLDGPHECSLCERKFVHASGLSRHMEKHELDLIPTSSPANANNGLPPINNLKVVLKCIHCGRIFLEPDTAIKHLCEHFSHTIEAENEFQSVAELPYEFYLDEALNFLKIKFKNFDNKPIAHLKMIISSCVLQCEFCDYQFSEVYYLFLHSACHQPHRPFECFACEIHVSTAKQICTHWQAECVFAREYLKRGCLLQKYYVCNVCENKFNSLEQLHEHRYTAYHFFPRLDKKRGMLRLPCEYCDVVFETAKEIVNHFEEKHYKNNKRDPAAKYRQYLCDICGKTYTQSSHLWQHLRFHKGVKPFVCKETGCSRRFTIRPDLNDHIRKCHTGERPYHCLVCGRRFLTGSVYYQHRLIHRGERRYGCDECGKRFYRADALKNHHRIHTGEKPYGCLFCTKTFRQRGDRDKHIRARHSSLDANARLMMQLQKLQLEATARNNSSVSISNDDVLMLGNVPFPKSMFQPALNDMDASQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01522951; iTF_01521459;
- 90% Identity
- -
- 80% Identity
- -