Basic Information

Insect: Volucella bombylans
Gene Symbol: prdm10
Assembly: GCA_949129095.1
Location: OX422144.1:158541704-158545475[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0014 0.6 13.0 0.2 2 23 142 163 141 163 0.96

2 11 9.4e-05 0.04 16.7 1.7 2 23 196 217 195 217 0.96

3 11 0.00027 0.12 15.2 4.3 1 23 237 259 237 259 0.99

4 11 4.8e-05 0.02 17.6 5.4 1 23 267 289 267 289 0.99

5 11 0.099 42 7.2 3.2 1 23 294 316 294 316 0.94

6 11 0.0078 3.3 10.7 6.2 1 23 322 345 322 345 0.97

7 11 0.015 6.3 9.8 1.9 1 23 350 372 350 372 0.98

8 11 6.1e-05 0.026 17.3 0.9 1 23 378 401 378 401 0.97

9 11 3.8e-05 0.016 17.9 1.3 1 23 454 477 454 477 0.96

10 11 7.2e-05 0.031 17.1 1.7 1 23 499 522 499 522 0.96

11 11 0.016 6.8 9.7 1.9 2 23 554 576 553 576 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0014	0.6	13.0	0.2	2	23	142	163	141	163	0.96
2	11	9.4e-05	0.04	16.7	1.7	2	23	196	217	195	217	0.96
3	11	0.00027	0.12	15.2	4.3	1	23	237	259	237	259	0.99
4	11	4.8e-05	0.02	17.6	5.4	1	23	267	289	267	289	0.99
5	11	0.099	42	7.2	3.2	1	23	294	316	294	316	0.94
6	11	0.0078	3.3	10.7	6.2	1	23	322	345	322	345	0.97
7	11	0.015	6.3	9.8	1.9	1	23	350	372	350	372	0.98
8	11	6.1e-05	0.026	17.3	0.9	1	23	378	401	378	401	0.97
9	11	3.8e-05	0.016	17.9	1.3	1	23	454	477	454	477	0.96
10	11	7.2e-05	0.031	17.1	1.7	1	23	499	522	499	522	0.96
11	11	0.016	6.8	9.7	1.9	2	23	554	576	553	576	0.97

Sequence Information

Coding Sequence: ATGGGCCTTGGAGGAGAAGaaCCGTCTGTCTATGCCAAAAAAGCCTTACCGCAGAGGACGAAATTTGGTCCTTTCGAGGGAGAAATTCGTTTTACTAGTGATATATACTTAAATATATTACGTTCGCAATACCCACGACACTACCCACTCTTACAAGTCGGAAAATCAAGAGTTCTCATTATCACTAATGAAAATACTTCCAACTGGATGCGTTATGTTCGGCTGGCTCAAACATATTCTGAACAAAATTTGCAGttatttgaagaaaatgatCGAATTTATTTTAAGTGTACCCGCAATATTCAACCTAAAGAAGAACTTCGAGTTGGCTATCATAGTACCTACGCGGACAAATATAATTTACAGACTCTTGAACCATCCGTAGAGGACACTAAGAAGAAGTACGAGTTGGATAATCCATGGATGTGCTTTGAGTGTGATGATCGATTTTCAACATCAGAAGATATGCAAAAACATTTAGAAGTTCACGATGTAGAAGATGCATCTTGTCTCATATCAAAAAGAAAGATTAAACGAAAGCAAAGGGCCATTAAGAAGCTCTCAGAGTTACCCAAAAATTCCAGCagatgtttaatttgttttaaagttttcatGACTAATTCTAGtcttaaaaaacattttgctaCGCATTTAGCtgctcaaaaatcaaaaacaaggaTTACGGCAAAAAGTTCTGAACGTTCTCCGTATAAGTGTCATTTATGCTACAGGAAATTTGGCTCAGAAGAAAAACTTACCTCTCATCAGCAAACCCATTCCAGAACCGAACAAAAACCATACAAATGTCATCATTGTGATCAGCACTGTGCAACTCCTACAGCACTTGCAGCTCATATTCGCAGTCACACGAATCGTCTTTACTCATGTATTTACTGCCATCAGACCTTTAAATACGTAATGGACTTTAAGAAGCATGTTGCTCAGCACTGCTTTGAAGGATCATATCCATGTACCCACTGCAAAAAAAAATATAAAGAATATCATTTGGTACGAAAACATGTCCGAATCTTTCATCCTGCAGTTAAATATCCATGCAACGAATGTGACCGTTTATTTCTACACATAAGTTTTCTACGTCGTCATAAAGCGACTCATGTTAAAAAGGCATCGTTTCAATGCTCCGAATGTGGTGATAAATTCCAAAGTAAACGAGAACTAAAACAACATATCAAAATTCTGCACAAAGCCAAACGAAAAATGAAAAGGCAACAATCGACGGTTGTACCGCCTATGGAGAATGATGGTTCTCAATATCTTAAGCTCACACCGACAAAAAATAATTCTACCGTTCCAGCTAGAAATAATTCAACATCTTCTGAGGATTACCTGCAATATCAATTCAAATGCGAGGATTGTAAATTTGGCTTTAAACGACGAGGAATGTTAGTCAACCACATGGTCAAACGACACCCAGAGCGTAATATAAATTCAATCGAAGAACTGAATCAACCAATTGTCAAGCTTCAGACAGTCTTCAATTGCCCACATTGCccaaaagtgtataaaaacaATGCAAAGCGAAAGGCGCATATACTTAAAAATCATCCAGGCATGGAAGTACCTCCATCATTTCGCAGCAACCCGATTTTAAGTGATATTAATGTTCAGACTATAGGTTGCATTAAGACCGATGTGCAAAAGTGTCAATTGTGCTACAAGCAATATGCATCGCGAACACGTCTTCTTACGCATTATAGGAAAGCACACAAAAACGAACGAGTTCCAGATATTCCGTTGACGGTATCACCTCCAGCGCAGATTTTGATTGAAGAACAATGTGTAGAGCCCGGATATGATGTTTATAGACCGCCGGTATCAcctgaaaataaacttttgaaactTTCGTCTGCAGCACTCGAGTTGTCCAGTATTGAAGACCGAAAGTTCTTTGATTTCCTGAATGAACGTTCAGATACAACAGATATAACGGATAGCAATAGAAGTAATTACAAAATGGTAGAGAGCGAATTTGCAGAAACTTCATCGAATACGGAATTAAATCGGTTGCCCGAGTTGTTTGAGGAATCGATAGCTTGTATTTGA
Protein Sequence: MGLGGEEPSVYAKKALPQRTKFGPFEGEIRFTSDIYLNILRSQYPRHYPLLQVGKSRVLIITNENTSNWMRYVRLAQTYSEQNLQLFEENDRIYFKCTRNIQPKEELRVGYHSTYADKYNLQTLEPSVEDTKKKYELDNPWMCFECDDRFSTSEDMQKHLEVHDVEDASCLISKRKIKRKQRAIKKLSELPKNSSRCLICFKVFMTNSSLKKHFATHLAAQKSKTRITAKSSERSPYKCHLCYRKFGSEEKLTSHQQTHSRTEQKPYKCHHCDQHCATPTALAAHIRSHTNRLYSCIYCHQTFKYVMDFKKHVAQHCFEGSYPCTHCKKKYKEYHLVRKHVRIFHPAVKYPCNECDRLFLHISFLRRHKATHVKKASFQCSECGDKFQSKRELKQHIKILHKAKRKMKRQQSTVVPPMENDGSQYLKLTPTKNNSTVPARNNSTSSEDYLQYQFKCEDCKFGFKRRGMLVNHMVKRHPERNINSIEELNQPIVKLQTVFNCPHCPKVYKNNAKRKAHILKNHPGMEVPPSFRSNPILSDINVQTIGCIKTDVQKCQLCYKQYASRTRLLTHYRKAHKNERVPDIPLTVSPPAQILIEEQCVEPGYDVYRPPVSPENKLLKLSSAALELSSIEDRKFFDFLNERSDTTDITDSNRSNYKMVESEFAETSSNTELNRLPELFEESIACI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01522898;
90% Identity: iTF_01522898;
80% Identity: -