Vbom038187.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422141.1:60069955-60072620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.57 13.1 0.8 1 21 88 108 88 109 0.96 2 11 0.84 3.6e+02 4.3 0.3 2 23 116 137 116 137 0.86 3 11 0.00063 0.27 14.1 0.6 1 23 170 193 170 193 0.95 4 11 0.00017 0.071 15.9 0.3 1 21 198 218 198 219 0.95 5 11 0.0013 0.55 13.1 0.8 2 23 568 590 567 590 0.94 6 11 0.0037 1.6 11.7 2.2 2 23 618 640 617 640 0.93 7 11 0.023 10 9.2 0.1 5 20 654 669 652 671 0.93 8 11 4.4e-06 0.0019 20.9 2.6 1 23 679 701 679 701 0.97 9 11 1.1e-06 0.00047 22.8 6.6 1 23 707 729 707 729 0.98 10 11 5.2e-06 0.0022 20.7 1.7 1 23 735 757 735 757 0.98 11 11 0.12 51 6.9 2.3 1 22 763 784 763 784 0.93
Sequence Information
- Coding Sequence
- ATGTTTATGGCGGAGGCAGACATAAAAATAAAGGCAGAACCTTTGGATGTGGACTTTTCTGTAATTAAAGTGGAGGAGCTCATTATTATACCTGAAATCGAAGACTTGTTACACAACTGCCTAGTCTTACCGGAACGCAGTCGAAAAAACACATTCAATTTGCTAATTCCCAAAGAGGAGCCTCAAGATGAGGATGAGAACAAATTAAGTCCCTTACATTTCCGCACCCCATCACCTCGTACATTATCTCCTAAGCCAAATTTCCAATGTGGTACCTGCAAACGTAACTTTAATAACTCCCAAAGTCTTGTCGACCACAAACGTCTACGATGTCGTAACACAAATGTCTGCCGTTTCTGTGGGCAAATTTTTCGGACTTACCTTATCCTTCAGGACCATGAACAGCAGCATAAGAATAAAAAGTCTCCAAGTAAGGAACCGAAAAAAACGTCTCCCTTACAACCTAAAGAAGGATCGAAGCCGCCAGTTAGACAGCCGAAAGTAATTTATATTTGCAGAGTTTGCAATATGTCATTCGTAGCGCAGAAAACTTTAAATAAACACTACAAGGAaattcacaatatttcaaagtacaTCTGCAATCGGTGTGGCACATCGTTTAGTGTGGCTGCTCAATTCAAAAAGCATACAAAAGGATTGAGTCTTGTTCCGGTGAGGGTTGTTACGCCAAATGTTGTTACGGAAAGCGTTGTTGCTGTAAGTGATGTTCCCATCCATCCATTACTTAATGGAGCCACTATTGTTCCTAAAGTTGAATCTACAGAAACAGAGGAAATGATTATGGATGCTGCGGGTAAAAATGTTGAGATCCAAACAGAGGACCCTATAGACACTATACCAACAGATTGTATAAAAGAAGAACCCGCTGACAATGAGAGGGAATCACCAAGCAATGATTCGTCACTGGATTACGAAGATCTCATTCTCAAAGAGTTGGTGGATCGGAAAGCCAAATCGATGGCAAGGAAAGCCTTAAGTACATCAATAAAATCCTCGAAAGGCTTAAATGGTCACAACAATGGAGTTACTTCCCAAATTGAACCTCCGTCACTTGAAAATACAGATTTTGAAAACATTATTGCGACAAATACTCTTGCTAAAAACCGAGGAGATCAATCGCTTGCTGTTGTAAAGCCCTTAAATCCTCTTGCAACTGAACAACGGATGAAAGCTGTCATCAATGGAAACCAATTAGGTGGTATTGCACCTGTAAGTAAATTAGGAACTTTAAAGACATCATCGAAATTACCAACACCAAATGTAAGCCAATCAAATGGTGCTCTGGTCACATCTCCGCTCCAAACAATAAAAATCGAGTCTGAACCCCATCCCGTGAAACGGAAGTCAATCAATGAGCCACCAATAGATTCATGTTCGATTCCAAGTTCCGCCTCCCCCTCTAATTCTCAACAGGGCAGTGACATCGAAACATCTGACTCGAAATCTTATTTCCAAAACAAAGCAGAAGTGATAGAAAGTCTAAAGGAGGAATACCAGaaggcgaaaaagaaaaaactcagCGAGGGATTGCCAAACGATGCCCGCGAGCATTCATTACCATGTGTACAGCCCACCGATAAGATAGCAACTCCATGTTCGGTGTTCTTCCCTCTATGTGGTGACATAGAATCCTACAACGAAGCTGCGCGAATGTTAGACAAAGCTTTTCGCTACTCATGGATATGCCCTTGGTGTCCGCGTTGCTACATTCAACGGCATGCATTTGCAAAACATGTATCTAGTGTCCACTGTAAAAACGACCTTGATATTCAGGATTTGCTTTTTGAACTAAGGCCGGAACCCGCTCAAGATGTTATGCCTGAATCGTGCTACTGCCATATCTGTAGTGTGACATTAGCCGATCCAGACTCGTTACAGAAACACAGGAATGAATTCCATAAAAAAGACAGCACACCCAAAGTACAATTTAAATCCGAAAAATGTGGAAAGTTCTGTTCCTCACGGAGCACTCTAGCGGACCATATTGAGGCGGATTGTGGCAGAGAGCCACAATACGTGTGCAAGATCTGCGATAAGAAATTCTACACAAAAAGCACACTGAACTTACACAAAACCATGCATACAGGCGTGTTGCCACATCGGTGTGAGTACTGTGATAAATGCTTCCGGACTAGAGGACAACTAACAGTCCATACGAGAACACACACTGGCGAGCGGCCGTTTCCTTGCAAGGTCTGTGACCGGCGATTCACCCATCGGGAGACACTCATTGCTCACCTATCACGTCACATTGACATGAAACGCTACAAATGTTACGGCTGTGATACGTTCTTCTCGTGCATTTCGGGCCTTAAAACACACCGACTCACTCGTATGAGTACCTGTGGACAATTCAGATTAAACGCACGCCCTGTCGGACCTCGAGTTCGAGTGATCAAAGGCAACGTTATCTTTGAACCGCAACCCAAAATCAATCCCTACTTCCGACGATATGACCTCAACTGCGATGAAAACAGCCAAAACACAAACGAAAATGGTATCTTCCAGAAACAGAACCAGGAGAACGTAAAGGATCTcgttaaaaataatgaaattgtctcAATGGCACAGAAGAGCTAA
- Protein Sequence
- MFMAEADIKIKAEPLDVDFSVIKVEELIIIPEIEDLLHNCLVLPERSRKNTFNLLIPKEEPQDEDENKLSPLHFRTPSPRTLSPKPNFQCGTCKRNFNNSQSLVDHKRLRCRNTNVCRFCGQIFRTYLILQDHEQQHKNKKSPSKEPKKTSPLQPKEGSKPPVRQPKVIYICRVCNMSFVAQKTLNKHYKEIHNISKYICNRCGTSFSVAAQFKKHTKGLSLVPVRVVTPNVVTESVVAVSDVPIHPLLNGATIVPKVESTETEEMIMDAAGKNVEIQTEDPIDTIPTDCIKEEPADNERESPSNDSSLDYEDLILKELVDRKAKSMARKALSTSIKSSKGLNGHNNGVTSQIEPPSLENTDFENIIATNTLAKNRGDQSLAVVKPLNPLATEQRMKAVINGNQLGGIAPVSKLGTLKTSSKLPTPNVSQSNGALVTSPLQTIKIESEPHPVKRKSINEPPIDSCSIPSSASPSNSQQGSDIETSDSKSYFQNKAEVIESLKEEYQKAKKKKLSEGLPNDAREHSLPCVQPTDKIATPCSVFFPLCGDIESYNEAARMLDKAFRYSWICPWCPRCYIQRHAFAKHVSSVHCKNDLDIQDLLFELRPEPAQDVMPESCYCHICSVTLADPDSLQKHRNEFHKKDSTPKVQFKSEKCGKFCSSRSTLADHIEADCGREPQYVCKICDKKFYTKSTLNLHKTMHTGVLPHRCEYCDKCFRTRGQLTVHTRTHTGERPFPCKVCDRRFTHRETLIAHLSRHIDMKRYKCYGCDTFFSCISGLKTHRLTRMSTCGQFRLNARPVGPRVRVIKGNVIFEPQPKINPYFRRYDLNCDENSQNTNENGIFQKQNQENVKDLVKNNEIVSMAQKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -