Vbom042889.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422141.1:125370068-125377142[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4 5.9e+02 3.6 1.8 2 23 165 187 164 187 0.94 2 17 0.0038 1.6 11.6 5.0 2 19 230 247 229 249 0.94 3 17 0.0034 1.4 11.8 0.0 3 23 291 312 290 312 0.95 4 17 0.0014 0.6 13.0 3.4 2 23 319 340 318 340 0.96 5 17 0.0079 3.3 10.7 1.6 1 23 346 369 346 369 0.98 6 17 0.00016 0.067 16.0 3.3 2 23 376 398 375 398 0.96 7 17 5.1e-05 0.022 17.5 0.5 1 23 445 467 445 467 0.98 8 17 0.026 11 9.0 1.0 1 23 472 494 472 494 0.97 9 17 1.3 5.3e+02 3.7 0.1 2 23 511 534 510 534 0.85 10 17 5.7e-05 0.024 17.4 0.5 1 23 540 562 540 562 0.97 11 17 0.0048 2.1 11.3 0.6 1 23 568 591 568 591 0.96 12 17 1.3 5.7e+02 3.6 0.4 2 23 597 619 596 619 0.93 13 17 0.00014 0.061 16.1 0.3 2 23 623 645 622 645 0.96 14 17 0.00011 0.046 16.5 0.4 1 23 651 674 651 674 0.93 15 17 0.0021 0.89 12.5 1.2 1 23 680 702 680 702 0.97 16 17 0.00011 0.048 16.5 4.6 1 23 708 730 708 730 0.98 17 17 0.00016 0.068 16.0 0.1 1 23 736 761 736 761 0.94
Sequence Information
- Coding Sequence
- ATGAAGACTAAGTGCCTGCGTTGCAATACCCAATTAGTTCAGGACTATCATTTAGTTTTCGATGAAACTGGCAAGGAACTCCAACTGGACAGGCTCCTAgaagaacattttcaaattaacGTTGAAGAGGATCCCAAAACAACTCAGGCACTATGTGAAGACTGTATCAATGAACTAATTGAACTCTATGATCTAACCGAGAGAAATCAGCAGAAGCTACAAACCACTAAAACTGGTGATTTCCAAGAGCTAAAACACGAAGAAGATTCGGATATCGATGAGGTggaagtggaatttgaaagtgAAGGTGCAAATGAAGTTATACCCGGGAGCAGCTGTGATGAATTCTCTGCCTTGGACGATGAAGTTGAGGACCATATCACGCTGGAAAATTTAGAAGGATTAAATGAACTAGAAGGGACTAGCATACAGGAATATGTTCGAAAAGTGATCAAAAGTGAATTGCAAGAGATTATCTGcaataaaaatacaaagtgTAGACTGTGCCACGAAGTGCTGAAAAGCCATACAGCCGTTTTGATGCACATAGCCTCAAACCATGAGTGCGAAGATGCGACCTATCCATGTATTATGTGCAATAGAATGGGCGAATTCCCCTCAATTAAGGACCTGGCCTACCACATTGTCCTGAAACACTATGATCTCAACggCCTGAACATCTATTGCGTCTGCCCTGAGTGTGAGAAAAGATTCTCAACTTTTTCTGAATTCAACAAGCACAATTGCTGCAAAAAGTCATGTGGAAGTCGAGTGCAACTGGAATGTGTACCTTGTTCAaaggattttatttcaaataagagGTATCGTTTTCATTTGCAATTTCATCTGGAAAAACATCGACCGAAGGCATGTTTTATTTGTGATATTGTGTTTTCAGACGAAAACGATTTCTATGAACATATAATGTATGCACACGAAAAAAATGCCGATCTCATATGCAAAAAGTGCGACAGAGTTTGTACAACCAAGAAGTCCTACGATAATCACATAAAATTGCACAATGCCGTTCGTTCGTACCAATGCGAATACTGCGCCCGTTCCTATTTATACAAACAAATGCTGATGAATCACATCAAACGCCAACATACCGATAAAGATGGAAATCaatgtaaaatttgtaaaaagtcaCTGGCCAACAAGCATCTACTGTCCAGACATATGCAGTTGAAGCATCGCCAACCCAtagaaggaaatttattttcatgttcATCGTGTGGACTCCTCAAAGTTTCTAAAAAAGAAGCAAACGCCCACATTGGTGAAAACCAGTGCGTAGAAGGAAATGTTACTGCGGTGTGTTTAAAAATAGCATACGCTTGTGAATATTGTGAGCTTGCCTACAATAATGTGGATAATTTAAAAACGCACCGTAAGACTCATAAGAAGCGCCAATTCATATGCTACATTTGCACTAGTGAATACTCAGAATACAAGAAATTGAAAACACACATCATAACGCATAAAAACGCTGAACCGATACATAAAGTATTTCCAATCAACAGGCACTATGTATGTGATTTCgatccctGCGATCAGTCCTATCTGACATGGCCATCGCTACGTGCGCACAAAACTCGACATACTGTCGATGCTAACTTTATCTGTGAAGTTTGCAGTCAGGCTTTTAAAAGTCAAACCCAGCTAAGTACTCATCTCAAGGCTCACGATAACAATGAGGTATATCCTTGTCAGTTTTGTGCGAAAATATGTTCCTCGCAAATGTCTCTAGCAGTTCATATCGCACGAAAGCACAACAACAATTGCATAGAATGTTCTATTTGCAAATCAACACACGCAACAGACGAAGCGCTAAAAGAACACATGGAAATGACGCATGTTGCAATAAGTTGTGACATGTGCGGCAAATTAACAAAGAACAAACGAAATCTAGATATACACATTCGAATGGTTCACACCAAAGTAAAAAGGTACTTCTGCCCATTGTGCAGCAAGGGATACTACAACAAGAGTGACTTGAAAGTCCATGAAAAAGCGGCTCATTCAGaggcaaataaattcaaatgcgGGCACTGTGACTTTGCGTCAAGCTACGAAAGCTCCTATCAAGCCCATTTACTTTTGCATGCAAACAAAAAGCCATTCAAATGCGACGAAtgttccaaagaattcaccagaAAAGCCTGCTTTAAACTACACCTTTTGCGACATTCCGATAACAAACCGTTCGCTTGTCCGATTGAAGACTGTGGCAAAAGTTTTGTCACAAGAGGAATCCTCAACACACACATTCGGGACAATCATTCAGCTAATCAAATGAAAGGTAGAAAATGTGCACGTGCCCCAAAACGAGGGAAAAATAACCTAAATCAAGTCGAGTCCAAAAACGACCCTATTAAGTTTGTAATATTTAAAATGGGTTCAAACCATATACCTTTGGAAGTAGAAAACGAGGATAGTGATCTCGTCCTAATTGATAATTCAAATACCGGTCAGGGGATTATTCTAGAATGCGGTGAAGAGAACAGTGACTTAATCGTGGACTTGGATACTACTGAAGTTTCTCAAGAATTTATGGTTAACggtttttaa
- Protein Sequence
- MKTKCLRCNTQLVQDYHLVFDETGKELQLDRLLEEHFQINVEEDPKTTQALCEDCINELIELYDLTERNQQKLQTTKTGDFQELKHEEDSDIDEVEVEFESEGANEVIPGSSCDEFSALDDEVEDHITLENLEGLNELEGTSIQEYVRKVIKSELQEIICNKNTKCRLCHEVLKSHTAVLMHIASNHECEDATYPCIMCNRMGEFPSIKDLAYHIVLKHYDLNGLNIYCVCPECEKRFSTFSEFNKHNCCKKSCGSRVQLECVPCSKDFISNKRYRFHLQFHLEKHRPKACFICDIVFSDENDFYEHIMYAHEKNADLICKKCDRVCTTKKSYDNHIKLHNAVRSYQCEYCARSYLYKQMLMNHIKRQHTDKDGNQCKICKKSLANKHLLSRHMQLKHRQPIEGNLFSCSSCGLLKVSKKEANAHIGENQCVEGNVTAVCLKIAYACEYCELAYNNVDNLKTHRKTHKKRQFICYICTSEYSEYKKLKTHIITHKNAEPIHKVFPINRHYVCDFDPCDQSYLTWPSLRAHKTRHTVDANFICEVCSQAFKSQTQLSTHLKAHDNNEVYPCQFCAKICSSQMSLAVHIARKHNNNCIECSICKSTHATDEALKEHMEMTHVAISCDMCGKLTKNKRNLDIHIRMVHTKVKRYFCPLCSKGYYNKSDLKVHEKAAHSEANKFKCGHCDFASSYESSYQAHLLLHANKKPFKCDECSKEFTRKACFKLHLLRHSDNKPFACPIEDCGKSFVTRGILNTHIRDNHSANQMKGRKCARAPKRGKNNLNQVESKNDPIKFVIFKMGSNHIPLEVENEDSDLVLIDNSNTGQGIILECGEENSDLIVDLDTTEVSQEFMVNGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01522043;
- 90% Identity
- iTF_01522841;
- 80% Identity
- -