Basic Information

Insect: Volucella bombylans
Gene Symbol: salm
Assembly: GCA_949129095.1
Location: OX422144.1:134315599-134339116[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8e-06 0.00075 22.1 1.7 1 23 296 318 296 318 0.98

2 9 6.6e-06 0.0028 20.3 1.8 1 23 324 346 324 346 0.98

3 9 1.7 7.3e+02 3.3 2.5 5 23 561 579 558 579 0.85

4 9 9.7e-08 4.1e-05 26.1 0.2 1 23 585 607 585 607 0.98

5 9 0.00078 0.33 13.8 0.9 1 23 617 639 617 639 0.98

6 9 4.5e-05 0.019 17.7 0.1 3 23 791 811 790 811 0.98

7 9 0.00016 0.068 16.0 3.6 1 23 817 839 817 839 0.97

8 9 4.2e-06 0.0018 21.0 3.0 1 23 956 978 956 978 0.96

9 9 6.7e-08 2.8e-05 26.6 0.7 1 23 984 1006 984 1006 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8e-06	0.00075	22.1	1.7	1	23	296	318	296	318	0.98
2	9	6.6e-06	0.0028	20.3	1.8	1	23	324	346	324	346	0.98
3	9	1.7	7.3e+02	3.3	2.5	5	23	561	579	558	579	0.85
4	9	9.7e-08	4.1e-05	26.1	0.2	1	23	585	607	585	607	0.98
5	9	0.00078	0.33	13.8	0.9	1	23	617	639	617	639	0.98
6	9	4.5e-05	0.019	17.7	0.1	3	23	791	811	790	811	0.98
7	9	0.00016	0.068	16.0	3.6	1	23	817	839	817	839	0.97
8	9	4.2e-06	0.0018	21.0	3.0	1	23	956	978	956	978	0.96
9	9	6.7e-08	2.8e-05	26.6	0.7	1	23	984	1006	984	1006	0.98

Sequence Information

Coding Sequence: ATGTGCTCGATCTTTCACAATCGAATTAATTACCGAGGTCCTAGGAGTGGGACTGGCACCAGTGGTAGTGGAAGTGGTGGTAGTGGGGGTGGAAGTACCCCCAATGATTCCGCGTCCATCAAAGATGACCCAGATCGAAATAACAATAGCGGGTCTGATGGACCAGAGACCCAACTTCAGCTACAACAGACTGACGAAGAAGACGACGAGGAGGACAGCATAGAGGAGGCTTTGGATTTATCAGTGATGTCACGTTTGCCCGCGACTGGACATGTTACTCTGGAGGCATTGCAGCATACAAAAGTGGCCGTAGCCCAATTTGCTGCAACTGCCATAGCTAACTCTCAGAACTATGACGAAGCAGTAAGCGATCTAGCTGTAGTGCAATCGACGATATTCAACGTGCAGCGTCAGCAATTGATGCAGATGCAGCTGATACAGCACCTGCAGTCACAACTTAAAAGTCGTACAACGGAGGAAGTATATGAAGATGAGGATGGGGATGAGCAGAAGAAACGTCTTGCAATGAAGGAAGACATTGATGGGAATACTTCCAGCAAGAGCACTGATCATAatttagagaaagaaaagaCTGAAATGAAAGAAGAGGATGAAGAACAAGAGGAATACAACCTAAGCAGAGAACTGGAGTGCACAAAGGCATTCCAACCGCACCTGTGTGACATCAGTTCATCATTTGCTTCTAGTATTATCACCAATCACGACCCTCCACCATTACCTAATGAACCAAACTGTCTGGAGATGCTACAACGACGAACTGAAGAGGTTCTGGATTCAGCTTCCCAAAGTGTGCATGCAAATCAACTGAATGATGAGTATGAATACTCGAAGAAAGATGGCCAGGGTAGAGGAGAGATCTTTAAGCATCGTTGCAAATATTGTGGGAAAATTTTTGGTTCCTATTCAGCTCTACAGATCCATCTTCGATCGCATACCGGAGAACGACCATTTCAGTGCAATGTATGTGGCAGTAAATTCACAACTAAAGGCAACTTGAAAGTACATTTTCAGCGGCATACTCAGATATTTCCGCCCATGTTGATGCCACCTACGACAAATGTTGAGCAGTATTCTCCATATCAACATGCTGGTATGGTGAGACCTGTTTCTACTACAAATCCACCAATGCGCCTACCATTTCCTGCTTTAGTCCAAATGCCTCCCTTTCGTTTAGAGTCACCTCCAAATCGGGAGCAGGAACCGACGACGACGATTGAAAAGAAACCAGAAATGCAACCTCAAACGGAAGCACAGGATCTACGTAAGACAATCGTTTCGAATGAAGATCGAATACGTTCGCCAGATGAGGATAAACCAAAGATAGAAATAGTCAAACAGCAGGAAACTCTAATTCATCCACCTAACAATCGAAGAAAGCGAGCTTTAAGTCCAAAAGAAACGCATCTTCCTCCTACGAAAACATTCGAAGAGAGTATACCCGagaatttatcaaaaacttCCAGACGATCATCACTTAGTAGAAGCTCAGCTGCAAGTTTTGAGCAAGTGCCTTCTGAGTATTCTCTAGCTCAGATGGAACGTCTAATTGATAAGTCGTGGGAGGACCTAATCGAAATCGATAAAACATCGGAAACATCAAAACTGCAACAATTGGTGgataatattgaaaataagcTCAGCGATCCAAATCAATGTATTTTCTGTCAGAAAGTCATGTCTTGCCGGAGCTCCTTGCAAATGCACATCCGCACGCATACCGGCGAGAGACCTTTCCGATGTCGAATTTGTGGACGTGCCTTTGCAACTAAGGGCAATCTAAAAGCTCACATGAgcatacataaaataaaaccgCCAATGCGAAGTCAATTCAAATGTCCGGTTTGCCATCAAAAATTCTCGAACGGAATCATTCTTCAGCAACACATTCGAATCCATACCCTCGATGACGGAGACAGTGATCGAGTGAAGTATagtgaaatgtcaaatgcagAGGATCAGAGTTCTACCCGATCGATTAGTACTTCGGATAATATGGACTTTTCACAGTCAGAGTACTCGGGACAAAGATCGGAATCGTCACAGGgtgattttgatgattttacCATGGCCAGTGAGGAGGAATCTCCAACTGAGGTGAACGGTGATGAAAGACGTGGTGAGAAGGAACGTATTGAGGGATCGGAAGGGGGTAGTTATTCAGATGAGAACGGTGCAATAGATTTGTCGGCAAAAAGCGCGGATAGTGAAAAAGGTTCGGAAAACACTAGCATAAGTGCAGTACCAAATTTTTTACTTATGGCACGGGAAAATCGTAGTCCAACAAAGTTCCCTCTGCTGCCATTTGGACCGCTTGGAATCATTGCTGGTCTGCGAGGTGCGGCAAACATATGTAATATTTGCTTTCGTATATTTCCCAATCCATCTGAACTGGATCTTCATATTCGTACTCATGCCAAAGAGGATAACTTTAAGTGCTCCATCTGTGATAAAGGCTGTGCCACTAAGGAAGAACTCCACCATCATATTTTAGCTCACAGATTTTGCCGAGATTCTGGAGATTCGagtcaaaatcaaaaaccacCTAATTTCTCCAATGATGACATCAACTTGGTGTCAAATCAAAATACATTCAAAATTGAGGTTAACTCAAGCGATAATCAAAAGCCACTCTCTCCTACCGAAGGCGAATCATCATCTACGAGATCTGAGAACAATGTTGGAGGCGATGCAGAACATTCGCTAATGAAGATGCAACTTCTTTCGGCGCTACCAAACGAGTCACAGATGCATCTGTCATCCGAGTCATCCAGATATACTCCAAATTCATTACTAAAACAACAGGAACTGCAATCAAATTCTCAAGAGCAACCGGCAAACAATAAACACTTTTGCACTGTTTGTCGACGAAATTTTAGCTCCAGTTCGGCGTTACAGATTCACATGCGAACTCACACGGGAGATAAGCCTTTTCAGTGCAATGTTTGCCAGAAAGCCTTCACTACGAAAGGAAATCTGAAGGTTCACATGGGTACCCATATGTGGACAAACCCAGCGTCGAGACGTGGTCGACGAATGTCATTAGAACTTCCAATTCACAGACCTAATCTACCACCATTAGGATCACATCAGGATTCGGAACTTTTATCACGACGACCAGAAATTTTCTTCCCCTATTTGCCACCCTTTTTCAATGGTTTACAGCCAAAGCATGTTGATTTACCCTCAGGGCCGTTTGCCGGCCTTCCACCTCCACCTTTCCCAAATGGCAGTGCTCAGAAATATTCTGATTTAATTGGTTTTGCACCATTTTTAGGACCTCCATACAATTTCCCGCCGCTACCAAGTTTAGATCGTCAAATTACTACATCACCGGTTGATGAGAAACCATCTATAAGTCCGAATGAGAGTTCCACGAACGGACCTACACATCATCACCAACAATTTGATAATCAGCAATCGATATCCGTTAAGAAAGATTTTCAGCATGATGAGTTTGtcaaaggataa
Protein Sequence: MCSIFHNRINYRGPRSGTGTSGSGSGGSGGGSTPNDSASIKDDPDRNNNSGSDGPETQLQLQQTDEEDDEEDSIEEALDLSVMSRLPATGHVTLEALQHTKVAVAQFAATAIANSQNYDEAVSDLAVVQSTIFNVQRQQLMQMQLIQHLQSQLKSRTTEEVYEDEDGDEQKKRLAMKEDIDGNTSSKSTDHNLEKEKTEMKEEDEEQEEYNLSRELECTKAFQPHLCDISSSFASSIITNHDPPPLPNEPNCLEMLQRRTEEVLDSASQSVHANQLNDEYEYSKKDGQGRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFQCNVCGSKFTTKGNLKVHFQRHTQIFPPMLMPPTTNVEQYSPYQHAGMVRPVSTTNPPMRLPFPALVQMPPFRLESPPNREQEPTTTIEKKPEMQPQTEAQDLRKTIVSNEDRIRSPDEDKPKIEIVKQQETLIHPPNNRRKRALSPKETHLPPTKTFEESIPENLSKTSRRSSLSRSSAASFEQVPSEYSLAQMERLIDKSWEDLIEIDKTSETSKLQQLVDNIENKLSDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCRICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTLDDGDSDRVKYSEMSNAEDQSSTRSISTSDNMDFSQSEYSGQRSESSQGDFDDFTMASEEESPTEVNGDERRGEKERIEGSEGGSYSDENGAIDLSAKSADSEKGSENTSISAVPNFLLMARENRSPTKFPLLPFGPLGIIAGLRGAANICNICFRIFPNPSELDLHIRTHAKEDNFKCSICDKGCATKEELHHHILAHRFCRDSGDSSQNQKPPNFSNDDINLVSNQNTFKIEVNSSDNQKPLSPTEGESSSTRSENNVGGDAEHSLMKMQLLSALPNESQMHLSSESSRYTPNSLLKQQELQSNSQEQPANNKHFCTVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPASRRGRRMSLELPIHRPNLPPLGSHQDSELLSRRPEIFFPYLPPFFNGLQPKHVDLPSGPFAGLPPPPFPNGSAQKYSDLIGFAPFLGPPYNFPPLPSLDRQITTSPVDEKPSISPNESSTNGPTHHHQQFDNQQSISVKKDFQHDEFVKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00389819;
90% Identity: iTF_01522847;
80% Identity: -