Vbom028483.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422140.1:318842571-318854618[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.073 31 7.6 4.0 1 21 78 98 78 100 0.94 2 23 0.00048 0.2 14.5 2.4 1 23 107 129 107 129 0.98 3 23 0.005 2.1 11.3 2.0 1 23 251 274 251 274 0.94 4 23 5.4 2.3e+03 1.7 0.6 1 20 311 330 311 332 0.90 5 23 0.033 14 8.7 2.1 3 23 348 368 346 368 0.97 6 23 0.0029 1.3 12.0 1.9 3 23 377 397 376 397 0.97 7 23 0.13 54 6.9 0.2 2 23 410 431 409 431 0.95 8 23 0.039 17 8.5 0.2 1 23 506 528 506 528 0.94 9 23 0.22 94 6.1 2.1 1 21 537 557 537 558 0.95 10 23 0.031 13 8.8 0.3 1 21 567 587 567 588 0.91 11 23 0.0011 0.47 13.3 2.9 2 23 599 620 598 620 0.98 12 23 2e-07 8.3e-05 25.1 0.9 1 23 627 649 627 649 0.98 13 23 0.00029 0.12 15.2 1.0 2 23 815 837 815 837 0.97 14 23 0.00036 0.15 14.9 0.7 1 23 878 901 878 901 0.97 15 23 1.2 5.3e+02 3.7 2.0 1 22 908 929 908 929 0.96 16 23 0.23 1e+02 6.0 0.4 1 23 938 961 938 961 0.90 17 23 0.08 34 7.5 3.1 1 19 967 985 967 986 0.97 18 23 0.00024 0.1 15.4 3.2 1 23 997 1019 997 1019 0.98 19 23 1.2e-05 0.005 19.5 0.3 2 23 1039 1060 1038 1060 0.95 20 23 0.00038 0.16 14.8 4.3 1 23 1066 1088 1066 1088 0.99 21 23 2.8e-06 0.0012 21.5 3.2 1 23 1094 1116 1094 1116 0.98 22 23 4.8e-07 0.0002 23.9 2.2 1 23 1122 1144 1122 1144 0.99 23 23 0.00014 0.059 16.2 0.1 1 23 1150 1174 1150 1174 0.93
Sequence Information
- Coding Sequence
- ATGCATTGTGCAACACCATTGCATTCCGATGAAATTTTGGATGCACCTATCATCCAAGAAGAAGTTCCAGTGGCCACGAGAAAACTAAATGATGGAAATTCCCCAAGTGTTTATAGGGTTCCTATAGAATTTTTGAAaaagaaggcaaagaaaaaaagaaaatcgcaGATCCAAGAATCGAAAATCACTACCCGAAGTCAAGGAAAGAAGGCCAAACCAATTTCTGGGCGTTTTCAATGCGATTCTTGTAATAAGTCGTTTGCTTGGAAAAAAGATTTATACCGACACGAAAGATGTCATAAGCCcaacactaaaaaattttcatgCCCACATTGCGAAcgtcgatttcttcgaaaagaCAAACTAAACTCACATTTACTTGTTCATTTGGCGGGTATAACTAAATCGAATCCATTATTTAGCTTTCAGTATTTCGCTCAGTGTTTGTTCTCCGAAAAGAAATTTAAGCACTTGAAATGCATGATATGTAACTATGATAGCGCGTCAAATGTCCATAAGCTTCGTTCGCATATAGTCtcacataagaatttagaattgGTAGAAGACCTAGGAAATAGCAGTGTCGTAAAGAGATTCTATCCTGATAAAGATTTAAAGGAAGTTATCCTTTTGATTAAACATCAAATTGAGGAAAACCAATTAGGTAAACTTTATTCGATAATCAATGAGAACACCTTTGAAATGGGTATCAGCGATTCAGATGAAAGTGATCCAGACTTTGATCATCAGTACAACTGTGAAGTTTGTTACGAATCATTTAATCGGAAACACAAAGTCATGACACATCAAGCCAACGAGCATTCGTTTCAAGAATGTCCCTACAAATGCGGTAAGTGCAAACTGAAATTTACTTGCCAAGAGATATTTAAAAGTCACCTTAAACACCACTGCGAGAATCCTGACAAAGAATACATATGCAGAAAATGTCCAGGTCGATTTATTTGGCCAACGAACTTTGAGAATCATGAATGCAGAAAAAGGAACACGAAAACAacagaattaaagaaaaagagTACGGCATGTGAAGTTTGTGAAAAGGAATTTACTTGCCTTCGAGATCTAAGAATTCACAAAAAGACACACATACCGGGCGATAAATCTCGTAGTTGTCTGATAtgtggcgaaacattttttcgacCACAGGACCTTCGTTGTCATTTAAAGACGCATTCGAAAAGTGAGACAATCtcacaagaaaagaaaattgtatgtATGCTTTGCCAAGCAAAGTTTCAAACTATTAATGAACTTAAACAGCATTTGTACATTCATTCAGATGGAGAAACAGACGTCAATTTCGAAAACTGCGAATTTGTAACCAACTTTTATCCAGATGCAGATAAAAGTGTTATTACCGACCATATTCGAATCTGCTTTAGAGAAAATAGACTTTGTCAGTTCTATATGGTGAGAAACAAGTTCGGCTTTGAAGGAACCCTTAGTGACTCGGATAGTGAAGTTGAAAAGCAAGCTAGCGAAGTTCCTTCCGTAACTTACATATGTGAGTTGTGTGATATGAAATTTCCACGTCTGCAAGCAATTCTTCAACATCAATATGACCATGgtcaagaaataaataatttcccCCATAAATGCGATAACTGTAAGGAACAATTTGTTTGTGAAGCTCTTTTAAAACGACACGTTAGAAGTGAGTGCCTCAACCCATACAGAAAACACGCATGCCCAAAATGTGGGATAAAATTTACGTGGAAGATCAATTTAGATGCTCACCTCTGTATAATAAACGAGAAAAGTTCTGAGGACAACAAAACATGCGAAATCTGCGgaaagaaattcatttggtTAAAAGACCTTCACAGGCATAAACGAACCCATATTCCTGATGGGAAGAAATTTGAATGTCTAGTTTGCGAAAAGAAATTTAATCGAAAGGACAACTTGCGAGCACATATGAAAATTCACGCAATAGATTATAAGCAAAAACCAGGCACCGAAATAAAATGGGAGCAACAAGATGAAAACATGTGCAGGCCACATGGTGAGAAAATCATTCAGTGTAAGATCTGTTTTTCGAAACATAATACAATTCGAGATTTAGGGACTCATTTGTTGACGCATAAAAATCCGAATACACTCGACCAAAAGGAATCAAACGTAATGGCGCTTTCCATGTTACTTTATAACAAACAGATGGACTTTCGAACGCTTTCACATACAATAAGCGAAGACCTAACCTGTGGCACAAACGATCATTTCTACTCCATTACAAACGAAATGGGCTATGAGTTGAATTTGATTGATTCGGAAACATGTACTGATATGGAGTCaaatgacgacgatgatgatgttgGAAATAGGGATGGTGTCGATgtTCATATGAAAGTTCATCAGAATGCCACGCACCTTTTACTTCCTGACATCTATTACTTAGCTAGGCCGAATGGCACAAAAATAGCTCAATGCAAGCATTGTGACCAAAAATACTCCACTATTTACGAGTTACTTGAACATATACAAATGATTCATTTAACATATCAACTGCCTGGCACAATTCCAAATCCAACTAGTTATTCCATTACAAACGCTTTAGGATACGAAATGGATATCGAAGATTCCGAAACGGAAAGAGaagaaacaacagaaaaatatatatgtgaACTTTGTGGAGCACAATTTAATCGTCGTTTCAAGCTACTACAACATCAACAATCGCTACACTACTCTGACAATATTCCCCATAAGTGCAACCAATGCAGCTTCAAATGTGTCTCAGAGGCTGTGCTTGGCTACCACATGCGAACACAATGTAAGAATGCATTGAAGCAGTTTCGTTGCAGCAAATGCACCATGCGATTTATGTGGgaggaaaatttagaaaatcatGAAAGTTTAATACATGATAGTCGTCGAACGCACACCTGTGGTGTATGCAAACAGGATTTCGCAACTCATCATGATCTTAAATCTCACAACGATTGCAAGCCACCAGTCGAAATTAAAATCTTTGAATGCAATCTCTGTAACCGTAAATATAATCGGAAAGATAGACTGATGAAGCATAAGAAAGTACATAGTACAGGACCAAAGGAAGCACAAGCTAAAAGCACTCAGTCAACAGATAAGAAGTTCTTGTGTGCATTTTGTGGGAAGGAAGTTTCGAGTTCTTCAAATTTAGTCATACACATGAGGCGGCATACGGGTGAAAAACCATTCAAATGCGAATTTTGCAATAAGGGTTTTCCACGGTCTTCAGATTTAAGTTGTCATAGGAGAACACACACTGGGGAAAAGCCGCACAAGTGTTTAGTGTGTGGCAAGGCATTTTCGCGTTCATATAAATTGCAAACACACAAACGTGTTCATTCAGGAGAACGGCCATACAAATGTTCATACTGTGAGAAGAGTTTTACTCAATCTAATGATTTAACGCTTCATGTGCGAAGGCATACAGGGGAGAGACCATATATATGCGAGATTTGTGGTGAAAGATTTATACAGGGAACAGCACTAAGAAATCATCGAAGAATGCGGGGAcattatgaaatttaa
- Protein Sequence
- MHCATPLHSDEILDAPIIQEEVPVATRKLNDGNSPSVYRVPIEFLKKKAKKKRKSQIQESKITTRSQGKKAKPISGRFQCDSCNKSFAWKKDLYRHERCHKPNTKKFSCPHCERRFLRKDKLNSHLLVHLAGITKSNPLFSFQYFAQCLFSEKKFKHLKCMICNYDSASNVHKLRSHIVSHKNLELVEDLGNSSVVKRFYPDKDLKEVILLIKHQIEENQLGKLYSIINENTFEMGISDSDESDPDFDHQYNCEVCYESFNRKHKVMTHQANEHSFQECPYKCGKCKLKFTCQEIFKSHLKHHCENPDKEYICRKCPGRFIWPTNFENHECRKRNTKTTELKKKSTACEVCEKEFTCLRDLRIHKKTHIPGDKSRSCLICGETFFRPQDLRCHLKTHSKSETISQEKKIVCMLCQAKFQTINELKQHLYIHSDGETDVNFENCEFVTNFYPDADKSVITDHIRICFRENRLCQFYMVRNKFGFEGTLSDSDSEVEKQASEVPSVTYICELCDMKFPRLQAILQHQYDHGQEINNFPHKCDNCKEQFVCEALLKRHVRSECLNPYRKHACPKCGIKFTWKINLDAHLCIINEKSSEDNKTCEICGKKFIWLKDLHRHKRTHIPDGKKFECLVCEKKFNRKDNLRAHMKIHAIDYKQKPGTEIKWEQQDENMCRPHGEKIIQCKICFSKHNTIRDLGTHLLTHKNPNTLDQKESNVMALSMLLYNKQMDFRTLSHTISEDLTCGTNDHFYSITNEMGYELNLIDSETCTDMESNDDDDDVGNRDGVDVHMKVHQNATHLLLPDIYYLARPNGTKIAQCKHCDQKYSTIYELLEHIQMIHLTYQLPGTIPNPTSYSITNALGYEMDIEDSETEREETTEKYICELCGAQFNRRFKLLQHQQSLHYSDNIPHKCNQCSFKCVSEAVLGYHMRTQCKNALKQFRCSKCTMRFMWEENLENHESLIHDSRRTHTCGVCKQDFATHHDLKSHNDCKPPVEIKIFECNLCNRKYNRKDRLMKHKKVHSTGPKEAQAKSTQSTDKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGEKPHKCLVCGKAFSRSYKLQTHKRVHSGERPYKCSYCEKSFTQSNDLTLHVRRHTGERPYICEICGERFIQGTALRNHRRMRGHYEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01522834;
- 90% Identity
- -
- 80% Identity
- -