Basic Information

Insect: Volucella bombylans
Gene Symbol: Cdc42
Assembly: GCA_949129095.1
Location: OX422143.1:82292825-82321077[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.6e-05 0.007 19.1 4.4 1 19 271 289 271 291 0.96

2 16 2.9e-07 0.00012 24.6 0.9 1 23 299 321 299 321 0.98

3 16 0.00012 0.049 16.4 1.8 1 23 326 349 326 349 0.92

4 16 1e-06 0.00043 22.9 0.2 1 23 355 377 355 377 0.96

5 16 9.8e-05 0.042 16.6 1.8 1 23 383 405 383 405 0.98

6 16 2.4e-07 0.0001 24.9 0.5 1 23 411 433 411 433 0.98

7 16 8.6e-08 3.6e-05 26.3 3.1 1 23 439 461 439 461 0.99

8 16 0.92 3.9e+02 4.1 0.0 7 23 463 480 463 480 0.92

9 16 6.6e-06 0.0028 20.3 6.5 2 23 490 512 490 512 0.96

10 16 2.9e-07 0.00012 24.6 5.8 1 23 642 664 642 664 0.98

11 16 1.2e-06 0.00049 22.7 3.8 1 23 670 692 670 692 0.98

12 16 0.00023 0.099 15.5 0.7 1 23 698 721 698 721 0.96

13 16 4.2e-07 0.00018 24.1 1.8 3 23 731 751 730 751 0.97

14 16 0.025 11 9.1 3.3 2 23 757 778 756 779 0.94

15 16 4e-06 0.0017 21.0 0.6 1 23 784 806 784 806 0.96

16 16 3.2e-05 0.014 18.2 0.2 1 21 812 832 812 833 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.6e-05	0.007	19.1	4.4	1	19	271	289	271	291	0.96
2	16	2.9e-07	0.00012	24.6	0.9	1	23	299	321	299	321	0.98
3	16	0.00012	0.049	16.4	1.8	1	23	326	349	326	349	0.92
4	16	1e-06	0.00043	22.9	0.2	1	23	355	377	355	377	0.96
5	16	9.8e-05	0.042	16.6	1.8	1	23	383	405	383	405	0.98
6	16	2.4e-07	0.0001	24.9	0.5	1	23	411	433	411	433	0.98
7	16	8.6e-08	3.6e-05	26.3	3.1	1	23	439	461	439	461	0.99
8	16	0.92	3.9e+02	4.1	0.0	7	23	463	480	463	480	0.92
9	16	6.6e-06	0.0028	20.3	6.5	2	23	490	512	490	512	0.96
10	16	2.9e-07	0.00012	24.6	5.8	1	23	642	664	642	664	0.98
11	16	1.2e-06	0.00049	22.7	3.8	1	23	670	692	670	692	0.98
12	16	0.00023	0.099	15.5	0.7	1	23	698	721	698	721	0.96
13	16	4.2e-07	0.00018	24.1	1.8	3	23	731	751	730	751	0.97
14	16	0.025	11	9.1	3.3	2	23	757	778	756	779	0.94
15	16	4e-06	0.0017	21.0	0.6	1	23	784	806	784	806	0.96
16	16	3.2e-05	0.014	18.2	0.2	1	21	812	832	812	833	0.95

Sequence Information

Coding Sequence: ATGTTGCATTTTTTGCCTGATGTGGAAAATGTGATTCCTGACGACTTGGAAAAACGAATCGAGAATCTCTGTATAAGATTTGTAGCACTTTGGAAGCAAGTCGGACGAACACATTCACGCATGGTGTCGAAGTACGCCGAATGGCTTGAAGAAATTGAAGTGTGTTTCCTACCAACTTCTGTGGCAGATGTCAACAGTCAGCGACCAGCAGCAGTAGTGCCTTCTTCAAGCAGTCAACAGGATCATCACAGAAAGGACTTTGAGGAGTGCAGTAAGAGATCACAACGACGCCGCCTAGCAGAGCTAAGTAAAGTAGATAATTCCGCTGTTAATTCACTTTTGAATAATTCCAGCAGATCTAACGCCGCTTCTGTAAAATTCAATACTGACGAAGTGTTATCTCTAATCACTGaggctaagcttagaaaacatgAGTACCTACTATTGAAGgactttattaattcaaaatccTCAAACGTGTTACCATCATACAAAAAAGTATTGAAGGCTAAGAAGCGGTGTTATGCATCTGAAGTGTTGGTCACGGAATCGTCTGCTGAAGTAGAACTACAATCTTTATTAGATCATACTGCAACTCGGATACTGGAATCTCAAAAACGAGTTCTTGATAGTATTGACATTAATGGGGATTTGCTTTTGATCGATGAATATGAAGAAGAAAAGTTGAATGTGATCGAGAATTTTGAAACAACGGAGGAACCGAAAGCAAATGCAAAATCAACCTTAAAGATCGACGAACATAACGCCAATACCGCTCTTTGCAAAATTATTCGTGACAGCAGCAGAAGATTCCAGTGCGATCAATGCCATAAggcttttaaaagaaaatctcaTCTTAAGCAGCACTCACTATGCCACACAAAATTAAAGCCGTATCAGTGCACAATATGTGAAAAGAGGTTTGGTAGATCCGACAACTTAAAAGTGCATATGTCCAACCATGGACAGAAGCATTTTAAATGTAATTCCTGCGATCGTTCCTTTGGTCAAGCATATCTTCTTAAACGACACAAAGATCAAACGCATAGCGAAGACAAACCGTTTCTGTGTTCTGAATGTGGACAACGTTTTGCCCGAAATGGTGATTTAGCAGTACATATGCGGAGACACACTGGCGAAAAGCCATATACATGTCAGTACTGCAACAAAGGATTTACACGTTCCACCGAAGTTTACGTACATGAAAGATATCATACAGGAGAAAAGCGACATGTATGTAGTATTTGTGGTAAAGCATTTCAGCGTCCATACAACTTATTGGTGCATGTTCGGACACATACTGGTGAGAGACCGTATCAATGTCCACACTGTCCTAAAAATTTTGCACAATGTAGTGATCTTAAGGCACATATAAGACGCCATACTGGAGAAAGTTTTATTCGAATTGGGGATCTAAAAAATCATATTGCCGTTGCTCATCCAGAGTCTGGTCATGTAACGCCTAATGAGTGCACGCACTGTAACAAGAAGTTTACGCGAAAGGATCATGTCCAACGACATATGCGAAACGTTCACAAACTGGCTATAGATATGGAAGCGGGGATCCCTGAAAAGATAAAAACGCAGACATATGAAAATGAAACGCTTGTGGAAACAGAGATTGAATATGCAAATCTCAAAAACCAAGATGCTGATGTAGAATTTATTACGAATTATGAGTCTGCTGGATTCGAAGACACTATTAGCAATAACACTGAATGTATGGCAGCCAATGAATTATGTAGCAGCGATGAAGATGGGAAACCATTGTCGGATTTACGTAATAAAAGCAATGATAATTTCCAAGAAAATATAACAGGAGAATTGGACACAATAAACTGTTCCGAAGTACATGTACCCAtgattgaagaaaaaacacCACAATCGGTCTCTTCATGTTTAAAAGAATCTACCATGCACCGACACAAGTGCAGTGAATGTGATAAATCATTTTCAAGGATAAGTCACCTAAGGCGACATCTTATGACGCATAGACAAATTAAACCATTCCAGTGCACAATTTGTGAGAAACGATTCAGTAGATCAGACCATTTAAAAATCCACCTTACCAAACATGACGAACACAAACCTTATCGATGTGATGGCTGCGATAGATCTTACGGGCGTTTAGATCTCTTGAAACTGCATAAGGAGAAAAAACACAATGGCACATTAAGTAAATCGGAAATTTGCGATTATTGCAATAAATCGTTTAGTAGCAAAAACTATCTTCGAAAGCATATTCGTTTGCACTTGGATAAAAACTGGACATGTAAATCCTGCTCACTTGAGTTTGATTCAAAACAAACTTTAAAAGAGCATTCAAAGACTCATCATAAAGAAAAACCATTTTTATGTTCAGAATGTGGGTTGCGATTTATTAGAAGGGATTATCTATTAATTCACATGCGCCGACATAATGGAGAAAAACCATACAAATGTAAATATTGTGATAAGGCATTTCCCCGAGGAACTGATTTAAATGTTCATGAAAGAAGTAACATGCAGACAATTAAATGTGTAGTTGTTGGTGATGGTGCTGTGGGAAAAACATGTCTTCTCATCTCCTACACCACTAACAAGTTTCCATCAGAATATGTGCCGACAGTATTTGATAACTATGCAGTAACAGTAATGATTGGGGGAGAGCCATATACTCTTGGGCTTTTTGATACCGCAGGTCAGGAGGACTACGATCGCCTACGCCCGCTATCATATCCCCAGACAGAtgtatttttgtggGTTCCAGAAATAACGCATCACTGCCAAAAAACACCGTTTTTATTGGTTGGCACTCAAATTGATTTGCGCGATGAAAGCAGTACGTTGGAAAAACTTGCTAAAAATAAGCAGAAACCAATTTCTATGGAGCTAGGAGAGAAATTAGCAAAGGAACTTAAGGCTGTCAAATACGTTGAGTGTTCTGCACTAACGCAgaaaGGACTTAAGAACGTATTCGACGAAGCGATACTTGCAGCGCTAGAACCACCAGAACCATCAAAGAAGAGGAAGTGCAAATTCCTATAA
Protein Sequence: MLHFLPDVENVIPDDLEKRIENLCIRFVALWKQVGRTHSRMVSKYAEWLEEIEVCFLPTSVADVNSQRPAAVVPSSSSQQDHHRKDFEECSKRSQRRRLAELSKVDNSAVNSLLNNSSRSNAASVKFNTDEVLSLITEAKLRKHEYLLLKDFINSKSSNVLPSYKKVLKAKKRCYASEVLVTESSAEVELQSLLDHTATRILESQKRVLDSIDINGDLLLIDEYEEEKLNVIENFETTEEPKANAKSTLKIDEHNANTALCKIIRDSSRRFQCDQCHKAFKRKSHLKQHSLCHTKLKPYQCTICEKRFGRSDNLKVHMSNHGQKHFKCNSCDRSFGQAYLLKRHKDQTHSEDKPFLCSECGQRFARNGDLAVHMRRHTGEKPYTCQYCNKGFTRSTEVYVHERYHTGEKRHVCSICGKAFQRPYNLLVHVRTHTGERPYQCPHCPKNFAQCSDLKAHIRRHTGESFIRIGDLKNHIAVAHPESGHVTPNECTHCNKKFTRKDHVQRHMRNVHKLAIDMEAGIPEKIKTQTYENETLVETEIEYANLKNQDADVEFITNYESAGFEDTISNNTECMAANELCSSDEDGKPLSDLRNKSNDNFQENITGELDTINCSEVHVPMIEEKTPQSVSSCLKESTMHRHKCSECDKSFSRISHLRRHLMTHRQIKPFQCTICEKRFSRSDHLKIHLTKHDEHKPYRCDGCDRSYGRLDLLKLHKEKKHNGTLSKSEICDYCNKSFSSKNYLRKHIRLHLDKNWTCKSCSLEFDSKQTLKEHSKTHHKEKPFLCSECGLRFIRRDYLLIHMRRHNGEKPYKCKYCDKAFPRGTDLNVHERSNMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLWVPEITHHCQKTPFLLVGTQIDLRDESSTLEKLAKNKQKPISMELGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPSKKRKCKFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -