Veme000304.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- -
- Assembly
- GCA_000949405.1
- Location
- NW:1312864-1316888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.2 5.6e+02 0.9 0.6 1 8 104 111 104 113 0.91 2 15 0.073 5.6 7.2 0.6 2 23 357 378 357 378 0.96 3 15 0.0007 0.054 13.6 0.4 1 23 386 409 386 409 0.94 4 15 2.5e-06 0.00019 21.3 0.3 1 23 415 437 415 437 0.99 5 15 0.0014 0.11 12.7 0.4 1 23 541 564 541 564 0.92 6 15 0.00012 0.0096 15.9 2.8 1 23 570 592 570 592 0.97 7 15 0.4 31 4.9 6.0 1 23 598 620 598 620 0.97 8 15 1.5e-06 0.00012 21.9 1.2 1 23 625 647 625 647 0.97 9 15 0.088 6.8 7.0 1.1 1 23 660 683 660 683 0.94 10 15 3.1e-05 0.0024 17.9 2.0 1 23 699 722 699 722 0.96 11 15 0.00014 0.011 15.7 1.1 1 23 731 754 731 754 0.98 12 15 0.0049 0.38 10.9 1.1 1 23 760 782 760 782 0.97 13 15 0.0047 0.36 11.0 3.3 1 15 786 800 786 808 0.79 14 15 0.00076 0.059 13.5 0.6 1 23 814 837 814 837 0.97 15 15 0.028 2.2 8.5 0.2 2 23 843 864 842 864 0.95
Sequence Information
- Coding Sequence
- ATGAAATACGACACGTGCCGCCTGTGCGGCATCAAGTCCGAATTTGAGTATTTGAGGCATATATTCGATGAAGTGACCAATGTGGCGCAGATGATAAACGAGACTTTGCCAATTAAGGTCTCGCAAGACGATCGCTCGAAATCTATATGTTTGGACTGTTACAACAAGGTGGTCAGTCATTATGATTTCATTCAAAGTATACTGGCGTGCTCGAAGGAGAGCGAGACAGAGACCGTCTCTTTCCTCGAAGTCAACAGGAACGAGAGATTGCAGAACGTGGTAATTTCCAAGATGCACAGCGACATGATATACACCTGTCCGAGTTGCCACAAAGACCTGATACTCTTACTGACGAGCAATTCAGAAGGCAGCGAcgcgtttgaaatttcactGGCCGCCGTGGACAAACTGGAGAAGCTGGCGGGAGAAAAGGGTCAGGTGCCTAGAGACATAGTGGAGCTCGCCAGTGTCTGCGCGCAGAAATCAAATACGGAAAGCGATGGATGCGAATTGAATTTCGATGTCGTCGACAACAGACAGAATGTCAATGGATTGCACAGCAGCTCGCAAAATGACACCAACTATGCAGACCCGTACGAGTCGAAGAAGGGCAAAAAGAGGAAGTTTCAGAGAAACGTTTCTACCAAAGTATCTGTTAGTCCTGCCAAGCTGCGAAAATTAGAGGCAAGATTGGGTGTAACGGAGCAGGACGCCGACGAATTGAACAGCGATTGCGACAGATCGAGCGTGACTGACTCGACGACATTCCAGACGATGAGCAACGGCATAGAATATCTCGACGAGAAGATAGGTAATGAGGAGAACGATGTGGAATATACGGTGGAGAGAGACAAGAATTTTACCAAGTTGGAGACATCGGGGACAAATTTAGACGTCAAGGAGCAAGATGAATTGAGCAGCGATTACGACAGGTCCAGTGTGGCTGGCTTGATAACGATCGAATCGGGACACAATGTCGCGGCGTACGGTGACGTGGAGGCTGACGTGGAAGGAGAATGCAGGGACGGTGCGAATGGCGCCGATAATCCAAACAGTCGCGTAAAACCGGTGTGCAACTTGTGCGGAGCCCGTTACATCTCGCAGACCAAGTACAAGTTTCACATGGAGAGGCACAGGTTGAACAAGATGGATAAATTTGTTTGTTGGATATGCGACAAAGAGACGAGGAATGAGAGCTTGCTGTGGGATCACTACAGCCACGTGCACGAGAGCCCGGTGCGGTACGTTTGCGCGGACTGCGACAGGGCGTTCGCGAAGAAGCCGACTTTGAAGGAGCATCAGAGGAAACACGGGCACTCGGGTTACAAAGAGACGCCGAGCGTCGACGCGGACAAGGATAGCAATCAGAAGGCTACGAGGCAGAGACGAAAGTGCACCGTCTGCAAGAAAGCGATAAAGCACGTGGATCCCAATGCCGTCAACGATCCGGCGATGTGCGCCTTCTGCGAGGACGCGAGCGCGAGTCCGACAGTCGACGGGGAAGCGAATACGAAGGCGATAGCGCAGCGACAGTACCACTGCTTCAAGTGCCGCAAGCACTTTATGCGCCGGGAGAGGCTCGAGTTCCACGAGATGCGGCACAACGAGAACATGGACGAGTTCGTCTGCAGCACGTGCGGCAAGGACTTCAGCGGTGAGAACTCGCTGTACGAGCACTACCTGTTCGTGCACAAGGGGGCGAGGCCGCACATCTGCGAGGTGTGCGGCAAGTCGTTTCAGCTAAAGACGCGACTGCGGGAGCACCAGCGGAAGCACACGGGCGAGAAGCCGTATCAGTGCGAGATATGCGGCCTGCGCTGCATGACCACGCACTCGCTCAAGTTCCACAAGAAGTCGCACGTACCCACCCGCCACACCTGCGAGATATGCGGCAAGGCGTTCATCAAGAAGCAGAATCTCAACGAGCACCTGGAGAAGCACTGGAAGAAGGACAAGAACATATCGCTCCCGCGTATATTCACGTGCCCCGTGTGCCGCAGCGATCTGCCGACCTACCGCATGCTGAAGCACCACATGACCGGGACCCATCAGCTGGACCGCCAGGACCCCCTGATACTCAATCAGAAACCGCTGTACGAGTGTAACGAGTGCCAGGAGAAGTTCAGCCATCAAATGTCGCTCAAGGCGCACAAGGAGAAGGTGCACGAGGGTAGGATTATGCCGCGTGTCTTCCAGTGCGACATATGCAAGACCGAGTTCAAGATCAAGCAGATGCTCATCAATCACATCAAGAGCAAGCACAGCAGCGAGAAGCGGTACAAGTGCGCGCAGTGCAACGTCATGTTCGCGGACATGAAAACCCTCTACCATCACGTGTTGCTGCACGGAAAGCTGTACACCTGCGAGTACTGCAACAAGAGCTTCAGGCAGAAAGACGTCAGGGACGTTCATTGCCGCATTCACACGAGCGACCGGCCCTACCAGTGCGCGGATTGCGACATGACGTTCGCCAGCTACGGCAGCCGCTCGAACCACCGCAAGAAGGCGCACGGGGACAACGAGACCGAGTGCCCGGAATGCGGGGAGAAGTGCGGCGACACGCAGGAAATCAGAATTCACTTGAACGCGCATCTCGGCgagaaattaaacaaattggaATCCACGTAA
- Protein Sequence
- MKYDTCRLCGIKSEFEYLRHIFDEVTNVAQMINETLPIKVSQDDRSKSICLDCYNKVVSHYDFIQSILACSKESETETVSFLEVNRNERLQNVVISKMHSDMIYTCPSCHKDLILLLTSNSEGSDAFEISLAAVDKLEKLAGEKGQVPRDIVELASVCAQKSNTESDGCELNFDVVDNRQNVNGLHSSSQNDTNYADPYESKKGKKRKFQRNVSTKVSVSPAKLRKLEARLGVTEQDADELNSDCDRSSVTDSTTFQTMSNGIEYLDEKIGNEENDVEYTVERDKNFTKLETSGTNLDVKEQDELSSDYDRSSVAGLITIESGHNVAAYGDVEADVEGECRDGANGADNPNSRVKPVCNLCGARYISQTKYKFHMERHRLNKMDKFVCWICDKETRNESLLWDHYSHVHESPVRYVCADCDRAFAKKPTLKEHQRKHGHSGYKETPSVDADKDSNQKATRQRRKCTVCKKAIKHVDPNAVNDPAMCAFCEDASASPTVDGEANTKAIAQRQYHCFKCRKHFMRRERLEFHEMRHNENMDEFVCSTCGKDFSGENSLYEHYLFVHKGARPHICEVCGKSFQLKTRLREHQRKHTGEKPYQCEICGLRCMTTHSLKFHKKSHVPTRHTCEICGKAFIKKQNLNEHLEKHWKKDKNISLPRIFTCPVCRSDLPTYRMLKHHMTGTHQLDRQDPLILNQKPLYECNECQEKFSHQMSLKAHKEKVHEGRIMPRVFQCDICKTEFKIKQMLINHIKSKHSSEKRYKCAQCNVMFADMKTLYHHVLLHGKLYTCEYCNKSFRQKDVRDVHCRIHTSDRPYQCADCDMTFASYGSRSNHRKKAHGDNETECPECGEKCGDTQEIRIHLNAHLGEKLNKLEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -