Veme012996.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vollenhovia emeryi
Gene Symbol
-
Assembly
GCA_000949405.1
Location
NW:527164-536796[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.014 1.1 9.5 0.2 3 23 449 471 448 471 0.94
2 10 0.0015 0.12 12.5 1.4 1 23 477 501 477 501 0.98
3 10 7.2e-05 0.0056 16.7 0.3 1 23 507 531 507 531 0.97
4 10 5.1e-05 0.0039 17.2 0.1 3 23 539 561 537 561 0.93
5 10 4.4e-05 0.0034 17.4 1.7 1 23 568 592 568 592 0.97
6 10 6.7e-05 0.0051 16.8 0.6 2 23 600 623 599 623 0.95
7 10 1.6e-06 0.00012 21.9 1.7 1 23 629 653 629 653 0.98
8 10 3.3e-06 0.00026 20.9 0.5 1 23 659 683 659 683 0.97
9 10 0.00074 0.057 13.5 0.7 1 23 689 711 689 711 0.99
10 10 0.00012 0.0094 16.0 0.3 1 23 786 811 786 811 0.97

Sequence Information

Coding Sequence
ATGTCGTGCAGaggagccgccgccgccgctgccgtcgcCACTTGCACGTCGAGACGGCACAGCTGCGAGAGGATTAGCTGTGAGGGCGAGGGGGCGGAATGCGCGCCCGCCAATGCGCTCTTTGCCTCCCCGAGAACGGAGGAGGTCGGTAAGAGGGACCGTAGGCCCAGAAGAAATGAGACCTGGCACCAAACGACGGCTGGAAAGGGCGTTGACGTTGTCGAGACGGTAGCCGACTTTGAGAAATGGCTCAAGATGCGTAGCACGGAGCCGCCGGTGCCGACGAGCATGGACCTGGACGCGGCCAAGATGGTGGAGGGCGTGGACCGCTATCTGGGCGAGGAGGTGCTGTCGCACAGCTGCTTCCTGAGCAAAGATCCGTACGGCTTGTCCATCGACATCGATCTAGCGGACGCCAAGAAGCTCAACCTGTCGTCCAGCTACGACCCGATACTGCAGGATCTGGCGCACGGCGAGAACCGGCTGCTGGAGCCACCGTGCGAGAAAGTCGTCGACGAGTTCATGCTGCCGGAGTTCCAGCTGGACCATCTCGATCCGCTAGCGGCGCTCGCGCCGGACGACATGATGGTGGCCGGCGAGATTCTACCGTCCGCGAGCAGCCAGCCGACGTTGAACGTGGAGAATCAAGATGTCGCACAAAGTGTCCCAAAAACGGGAATCCCAGCGCGGAGCGTCGAGACACCCTGCGAGAAATCCGCGCTCGGTCGACTGCCGAGTTTGGTCGCGAACGAGATGGGGGATGCGAAGGCAGAGCAGGAGACTGTGGCGCAATCTTCGGCGGCTTCCTCGGAGCTCTTCACCGAGGCTCTGTCGCCGATGGACGAGAGCTCGCCGAGTACCGTGACGAGCCCCATGGAGGTGGGCGCGGCAACGGAACAGTCCAAGAAGACGAAGCTCGAGCCTCGTATCATCAAGAAACGCCGGCAGATGACGGAGCGATTGGAGAAGAAGCTCGACAAGCGTATCAACGGCAAGAGCTTTGCGCCCGCTGATGCGGACACGCGGGACGGCACGATGGCCGTGGTCGCTATATCCACCGACAAGATCTCCAACATGACGCAGATCGTCATCAATACCGGCACGGAGAAGCAGATCTATCAGGGCAAGACCTCGGAGCTGATCGAGGCAACGGGCAACTTCCCAAAGCTGCCCAAGATCGACACCACTGCCGCAGTCTGGAACGGCGGCGCGGCCGACTACGCTGCCGACAGCAATCCGAGTAGTCAGTATGAAATTGTTATATCTAACGCGCTGGAGGAGCTGGGCATCACCGACGACAGCCTGCAGCCATTGTGCGCCACCGAGCACGACAAGGTCTGGCTCTGCCCGCGGGACGACTGTAACAGACAATTCGGCAGATTGTACACACTGAAAGGCCACTTGCTGGCCCACTATGGCGTCAGACCGTTTAAGTGCGACTTCGAGGGCTGCACCTGGGCCTTTTATTCCGAGTTCAAGCTGAAGAGGCACAAGGAGACGCATCTGAAGCGCAAGGACTACGTGTGCGAGGTGGAAGGCTGCAATCGTCGCTTCACCACCGTCTACAATCTGTGGAGCCACACGAAGCTGCACAGTCGTCCCAATCGGATCGTTTGCCAGGTGCCAGACTGCGGTGAGAAGTTTCAAACGAAACGGGCGTTGGAAGTGCATATGAAGTCGCACGACCAGCGCCACGCGCCTTACGTGTGCCAGCACGAGGGCTGCGGCAAACGTTACTACAGCAGCAACGCACTGACGTCGCACCAGCGTTCGCATAGCTACAAGGAAGTGGACATCAAATGCTCGTGGCCGGGCTGCGGCAAGATCTTCGACAAGCCGTGTCGGCTCAAGGCCCACATGCGTTCTCACACCGGCTACAAGCCTTACCCGTGTACTTTCCAAGACTGCAACTGGGCCTTCTCATCGTCCAGCAAGCTTAAGCGCCACCAGAAGAAGCACACGAACGAGCGCAAGTTCGTGTGCGACGTGCCGGATTGCGgcaaggcgtttatgcgctcGGAACATCTGAAGGAACACCGGCTGACGCACACGGAAGGCCGGTTCTTCCAGTGCTTCGTGTGCGCCGCCCGATTCTCCGCGAAGAGCAGCTTGTACGTGCACATTAAGAAGCATCAGCAGAGCAAACCGGACGACTTGAACGTGCCCGAGAGCGCTTGCAACGATCAGAAACGCGCGAGAACCAGGGAATCTCATTACTCGCGGGTGAAGCCGATTAAGCCGAAGCGGTGGAATACGGAGCTGGCGAGTGCCGCGGAAACTATCGCGAAGGAGAACGACGTCGAGAAGCAGAATGCCGACGTGTGTTCCCAGGATGAGAATCAAATGGAATGGCTGTATCGTTGTCCGATAGATGTGTGCGGGCATTTGTTCAGCAGCGAGACGAGTCTTCGCGAGCACATGTTAAAAGCACACGGTATACACTGCGACGATTTGCTGACTAAATCGTCCTCGGACGACGCCGACATAGATTACGTTTTATATACTGTGCACAGCTCACCGCCGAGCTCACCCAATGCCGTCGAAGAGGAACAGATGGTCATGGTGACCCCGTGCGAAGCCGTCATCCTCGACACCTCTTCGTCGAGAACAGACCATGGTCTGCCAGAAGCGgaaccgtcgccgccgccgccgccgccgccttcCAACACCTCGCTGAAAAGCTCGGAAACGTTCCGAAACGACGCGCGAACTGGCAAAGAAACTGTATCGGCGAAGGAGCAGGGCTCGGCGAGGACAGACGTAACGTACTCCGACTGGTCTAAACTGAAGAATAGTGCGTCGATGAGTTCGGTAGTAACGGAAGTGTCGGACGTTGTGCTGGGCGCGAGTGGTGATTTGAGCGAGGGTTTGCTGTTCACGGAATTGCCATCGATGTACTATCAGGACGATGTCGCAGGTACGGAATATCAGGTGCTGTTATTAGATTCAAGTCCGCTCGAGAGTGCCAGTAACTTGCGCGGTCTCGAGTGA
Protein Sequence
MSCRGAAAAAAVATCTSRRHSCERISCEGEGAECAPANALFASPRTEEVGKRDRRPRRNETWHQTTAGKGVDVVETVADFEKWLKMRSTEPPVPTSMDLDAAKMVEGVDRYLGEEVLSHSCFLSKDPYGLSIDIDLADAKKLNLSSSYDPILQDLAHGENRLLEPPCEKVVDEFMLPEFQLDHLDPLAALAPDDMMVAGEILPSASSQPTLNVENQDVAQSVPKTGIPARSVETPCEKSALGRLPSLVANEMGDAKAEQETVAQSSAASSELFTEALSPMDESSPSTVTSPMEVGAATEQSKKTKLEPRIIKKRRQMTERLEKKLDKRINGKSFAPADADTRDGTMAVVAISTDKISNMTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTTAAVWNGGAADYAADSNPSSQYEIVISNALEELGITDDSLQPLCATEHDKVWLCPRDDCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHTKLHSRPNRIVCQVPDCGEKFQTKRALEVHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKIFDKPCRLKAHMRSHTGYKPYPCTFQDCNWAFSSSSKLKRHQKKHTNERKFVCDVPDCGKAFMRSEHLKEHRLTHTEGRFFQCFVCAARFSAKSSLYVHIKKHQQSKPDDLNVPESACNDQKRARTRESHYSRVKPIKPKRWNTELASAAETIAKENDVEKQNADVCSQDENQMEWLYRCPIDVCGHLFSSETSLREHMLKAHGIHCDDLLTKSSSDDADIDYVLYTVHSSPPSSPNAVEEEQMVMVTPCEAVILDTSSSRTDHGLPEAEPSPPPPPPPSNTSLKSSETFRNDARTGKETVSAKEQGSARTDVTYSDWSKLKNSASMSSVVTEVSDVVLGASGDLSEGLLFTELPSMYYQDDVAGTEYQVLLLDSSPLESASNLRGLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00128451;
90% Identity
-
80% Identity
-