Veme003433.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- ZBTB41
- Assembly
- GCA_000949405.1
- Location
- NW:162313-168456[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.039 3 8.1 0.4 2 23 141 163 140 163 0.94 2 15 0.061 4.7 7.5 1.7 2 23 168 190 167 190 0.93 3 15 0.072 5.5 7.3 1.4 3 23 365 385 363 385 0.95 4 15 0.024 1.9 8.7 1.9 3 23 392 413 390 413 0.95 5 15 0.0072 0.56 10.4 1.9 1 19 423 441 423 443 0.95 6 15 0.00011 0.0082 16.1 5.3 3 23 454 474 452 474 0.96 7 15 0.00037 0.029 14.4 0.4 1 23 487 509 487 509 0.98 8 15 3e-05 0.0023 17.9 1.0 1 23 517 540 517 540 0.97 9 15 0.00038 0.029 14.4 5.7 1 23 546 568 546 568 0.94 10 15 0.00025 0.019 15.0 1.3 2 23 572 594 571 594 0.96 11 15 0.00016 0.012 15.6 2.7 1 23 608 630 608 630 0.98 12 15 0.00021 0.016 15.2 1.6 1 23 636 658 636 658 0.98 13 15 1.3e-07 9.9e-06 25.3 2.9 1 23 663 685 663 685 0.98 14 15 1.9e-05 0.0015 18.5 2.3 1 23 693 715 693 715 0.99 15 15 2.2e-05 0.0017 18.3 1.5 1 23 721 744 721 744 0.96
Sequence Information
- Coding Sequence
- ATGAATAGTAAAGTAGATCAATTCGCCAACATTGTAAATGTTTCCCACAAGAAACTCCAAGTATGCCGTTTGTGTGGAGAAAAGTCTTCGCACTATATTCCAATATTTGAGGACAaggataattatatttcgGAAAAAATAAGTAGATGTTTACCGATCATTATTTTTCCAAATGACAATTTACCTTCCAATGTATGTGGACATTGCCTAAATTACTTGAATACTAGTTATGAGCTGATTCTTACTGCAGTAGAGGCAGATAAACGTCTACGAATGCAATTGGATGAAGAACAGAAAAATGCTATCTTTACAGACAGAAATGTCGTAGCACCTTGCGAGGAACTAAAAATATCTAATGTAACAAATATCAGACCACCATCAATAAAAGAACTCAAGAGACGAGCTATCATCGGCCCTGTCAAATGTGACATGTGCAACTTGGATTTTCAAAATCTAGACACATTTGATGACCACATGgaacaatttcattttttcaaGTGGAGATGTCATCTCTGCGATAACAGTTTTAACGAATTTAATAAGCTAATAGTGCACAAAGCATCGAAACATAATAGTAATGTCGCAATATGCAATATTCGTCAATACACTATCGATCAGAATAAACAAGACAATACTGAAAAGAGTGTTGAGAATAATCAGAACGACCAGCAGGACATTATACACACAAGTGAGAATATCCATTATAACCAGATTAAAACGGAAGTGATACATGACAACAGTGTTCAGAATGATGAGAGTAATGAACAAGAGATGATAGTTGAGAATATTCAGAATAATCCGAAAATGGAGCAAGAGATTATTAATGAAAACAGTTACGAACAAGTTGTTACCATGAAGAATAACGAAATAGCAGGATCAATTAACTTTGAGATGGATTTCAGAAATGatattcttgaaataaaaaataattgcaatctGACACAGGCCTCGATGAAACGAACTAATCGCAGGTCTGATTTGAACAAAGTCGTAAAAGAGCAAAAAAGAGTTTGGCTACCACTCAAAACAACTCAGCATAAAAGAGTTTGGCTATCACTCAAAACACCTCAGCAAAAGAAAGATCAATTGTTTTGTGATTCTTGCAAGATCCGCTTTGGAGACGAGCGACATTTCGAGGCCCATAATAAGATACATGAGGAGAGAGTTATGGCTTGTACAATATGCTCTACAGAATGTTCGTCTGTATACAATCTATTTCTTCATAAACGTGAAAAGCACAATATGTACAAAAAGACGCAGTTAAAGTATACGTGTGATAAATGCGGACAATTCTTTACACACGGCTGGCATTGGCAGAATCACAATGAAAATAAGTGTTCCAAAATGGTCGACAAATGTTGCAAATATTGCAACACAGTTTTCTCGACACGTCTCAAACTGATACGCCATTTAAGGAAACACAAATGGGAGATGTTTAGTGATCCGACTGTGACTGTATATAAATGCGTTGCTTGTCCTAAAATATTTGTCGACaaggaattttatgaaaaacatAGAAACGTGCACGATCCAGAATGTTGGGATAAATTCCGATGTGATGTTTGCAACCGACCGTTCAGGGATAAGTTTCGATTAAGGGAACACCAGCTGTCCATTCATCAGAACATTAAGCCTCATCAGTGTAATATCTGTGGACGTTCTTTTGTACGTTTGCATAATATGAAGGTACACTGTAAAATTCACTTCGAGAATAAATGCGATCACTGTAACgcagtttttaaaaaacgcTTGGATCTAATAAAACATGTACGAGAGATACACGGTTTGAAGTTGTCCGACAAACGCCGCGCGAAAAGAGATTACATCTGCAAATTCTGCGGCAAGAAGCTCAGTACCCATCAATCGTTGATGAATCACGAGAGAATTCATACTGGAGAAATGCCGTATAGCTGTCCGATATGTCATCGGCCCTTCCGAAGTTACATCTCCAGATGGACTCATATACAGCGTCATCAGAAAGGAACCTTTGTATGTGAACATTGTGGAAAGTGCTTCAGttacaaacaaaatttaattgttcaCATTGCGACGCACTTGCCTGTGGAGGCTCGTAAATATCAGTGTAATATATGTGAAAAGAAGTTTCTGAGGAGTTCTCACCTGGCTATTCACAAACGTATCCACAGCGGAATACGGCCTTTTAAATGCGACGTGTGCTCGTTAAGTTTCACGCAAAAGGGTGATATGAAACGGCACCGAGCGCGGCGACACCTCTCGGAAAAGACAAACCTGTAA
- Protein Sequence
- MNSKVDQFANIVNVSHKKLQVCRLCGEKSSHYIPIFEDKDNYISEKISRCLPIIIFPNDNLPSNVCGHCLNYLNTSYELILTAVEADKRLRMQLDEEQKNAIFTDRNVVAPCEELKISNVTNIRPPSIKELKRRAIIGPVKCDMCNLDFQNLDTFDDHMEQFHFFKWRCHLCDNSFNEFNKLIVHKASKHNSNVAICNIRQYTIDQNKQDNTEKSVENNQNDQQDIIHTSENIHYNQIKTEVIHDNSVQNDESNEQEMIVENIQNNPKMEQEIINENSYEQVVTMKNNEIAGSINFEMDFRNDILEIKNNCNLTQASMKRTNRRSDLNKVVKEQKRVWLPLKTTQHKRVWLSLKTPQQKKDQLFCDSCKIRFGDERHFEAHNKIHEERVMACTICSTECSSVYNLFLHKREKHNMYKKTQLKYTCDKCGQFFTHGWHWQNHNENKCSKMVDKCCKYCNTVFSTRLKLIRHLRKHKWEMFSDPTVTVYKCVACPKIFVDKEFYEKHRNVHDPECWDKFRCDVCNRPFRDKFRLREHQLSIHQNIKPHQCNICGRSFVRLHNMKVHCKIHFENKCDHCNAVFKKRLDLIKHVREIHGLKLSDKRRAKRDYICKFCGKKLSTHQSLMNHERIHTGEMPYSCPICHRPFRSYISRWTHIQRHQKGTFVCEHCGKCFSYKQNLIVHIATHLPVEARKYQCNICEKKFLRSSHLAIHKRIHSGIRPFKCDVCSLSFTQKGDMKRHRARRHLSEKTNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -