Veme002168.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- -
- Assembly
- GCA_000949405.1
- Location
- NW:1953611-1962421[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.4e-05 0.0073 16.3 0.6 1 20 64 83 64 85 0.95 2 13 5.4e-06 0.00041 20.2 0.3 1 23 165 188 165 188 0.96 3 13 5e-05 0.0038 17.2 3.9 2 23 195 217 194 217 0.95 4 13 0.00059 0.046 13.8 3.8 1 21 223 243 223 248 0.94 5 13 1.1e-07 8.2e-06 25.6 2.4 1 23 255 277 255 277 0.98 6 13 0.00016 0.012 15.6 2.4 2 23 287 308 286 308 0.98 7 13 0.00024 0.019 15.0 0.2 2 23 315 336 314 336 0.97 8 13 2.2e-06 0.00017 21.5 2.3 1 23 342 364 342 364 0.99 9 13 2e-05 0.0015 18.4 2.5 1 23 370 392 370 392 0.94 10 13 1.8e-05 0.0014 18.6 0.9 1 23 398 421 398 421 0.94 11 13 2e-06 0.00016 21.6 0.6 1 23 427 449 427 449 0.97 12 13 3.5e-07 2.7e-05 24.0 1.0 1 23 455 477 455 477 0.99 13 13 1.6e-05 0.0012 18.8 1.5 2 23 484 506 483 506 0.95
Sequence Information
- Coding Sequence
- ATGGCAGAGACAACAGAAAAGATAGAGATCCTGAAGATTGAGGAGTATGCTGATGGTGTACTAATTGAAAACGGAGCCTCAGAGATTTTCTTTGACGGGGATATTTCACAGAATGAACCCGTAGTGGTAGCCAGCAGACCAATTACGGACAACGAGAAggACGATTTggttatttcaattataactGATTATCAATGTGTGACATGTCACCGTGTTTTCCAGTCGAAGGATATGCTGCAGAAGCATGTAGACATGTGCAGAGAGGAAGATGACTCGATTAATATCATCGGGCTTGATAATATGGTCAGTTACGATTCAGACGAAATGGATGATGAGGATGATGAGGATGATCCTTCAACAAGTTTAAGTGCTGAAGATTCGGATTCTAAAAGCCAAAAGAACAATAATGAAAAACCTGTCATTAAACCTGTGCCTGAGACGCAGTGTCATTGCTGCGGAGAAGACTTAAAGACGGCACACAGTGGCGGGGAATATAAGTGTTCCATTTGCGATCTCAGTTTCAAGAAAAAGGCATCTCTGGACAGACACGTTATAGTCATACATTGGAAGTGTGATTCGTGTACATGCAACGAATGCGGCTCTTCTTTTCGCGACAAGAAAGCTTTGAATAAGCATCGCTATACGACACATGGAGAtcgcaaaatttttaaGTGTGAGCCTTGCGATACTTACTTCTCCCGGAGTTACCACTTAAATCGTCACATAATGCAATCTGGTTGTCACGGTAACATACTTAATACGTTTAGCTGTCAAGTTTGCAAGAAAGATTTTACGCGTAAAGATAACTTGCGGGAACACTTGCGTACACATGCGGGAACGCCCCAGAGGCAAAAAAAGAAGTGTAAATATTGCTCGAAGGATTTCTTTACGAATCAACAGCTATTGGTACACGAACGCATGCACACAGGAGAGCGACCGGTCCAATGCGATTTATGCCCGAAGACATTCCTGTCACCGCTTGCACTGAAAAAGCATCGCCGTGTACATACCGGAGAGAAGCCGTTCGAGTGTAAATACtgtcaaagaaaatttgctgCTCGCGAAACATTAAATCGCCATCAACGGACGCATACGGGCGAGAAACCGCACGTATGCCAGTATTGTAACAAATCGTTCATACAGGCAGCACAATTAAGAGCACATGTATTCCATCACACAGGAGAGAACGGTTTCTATTGTGATGTATGCGGCAAGGCGTTTAATCGGAAAGCACGTTTGAATATCCACAAGAAATTCGTACATGAGGGAGCAATTCCATTCACATGCGAAGTGTGCGACAAGGGTTTTACGCGAAGAGAGGACTTGGTCAAACACAAACTGCTACACACTGGCGTTAAACCATTCAAATGCGACAAATGCTCGAAAGCCTTCTCGGCGAAATCGTCGTTGCAGGCTCACCTCAACACCCACAGACGCGAACCACCTCAGTCGTGCGTCGAATGCAACCGAGTGTTCATTCGGCAAGATTGCTTAATGCGGCACATTCGTGCAAAGCATCGGGAATTGTTGGAGGACGTAATGAATGAGGTCGAGAAGAAGCATTTGCAAACACAGTTGTACAACATTGCATCAATTGCTGCCGCCAAAACGGAAACCGGCGAATCTAGAGAACTTTCTACTGACGAGTTGTTGACGGCCATCCTCGATCTCTTGAGGATACTTATCGATGAGGAAACGTTGCAGTTGTTTGGTTCGCCAGAAACTCCGATACAAGATATCCTTGAAGCTGTGATCAGAAGATGCGGATACGAGCCGATAACATCGGAAGCTAACGTAATGCTCGCCGATAGGTTACGACAAAACATCAAGATTCTGTTCACCGTTGTCATCGACACAATGAATGATGAAACAGCGAAGTCTCTCTTGACAACAAAAACAGTGGACGATGTCATTCTTCATGTTTTGGAAGTATCGAATCGAAATTAG
- Protein Sequence
- MAETTEKIEILKIEEYADGVLIENGASEIFFDGDISQNEPVVVASRPITDNEKDDLVISIITDYQCVTCHRVFQSKDMLQKHVDMCREEDDSINIIGLDNMVSYDSDEMDDEDDEDDPSTSLSAEDSDSKSQKNNNEKPVIKPVPETQCHCCGEDLKTAHSGGEYKCSICDLSFKKKASLDRHVIVIHWKCDSCTCNECGSSFRDKKALNKHRYTTHGDRKIFKCEPCDTYFSRSYHLNRHIMQSGCHGNILNTFSCQVCKKDFTRKDNLREHLRTHAGTPQRQKKKCKYCSKDFFTNQQLLVHERMHTGERPVQCDLCPKTFLSPLALKKHRRVHTGEKPFECKYCQRKFAARETLNRHQRTHTGEKPHVCQYCNKSFIQAAQLRAHVFHHTGENGFYCDVCGKAFNRKARLNIHKKFVHEGAIPFTCEVCDKGFTRREDLVKHKLLHTGVKPFKCDKCSKAFSAKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIRAKHRELLEDVMNEVEKKHLQTQLYNIASIAAAKTETGESRELSTDELLTAILDLLRILIDEETLQLFGSPETPIQDILEAVIRRCGYEPITSEANVMLADRLRQNIKILFTVVIDTMNDETAKSLLTTKTVDDVILHVLEVSNRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423083;
- 90% Identity
- iTF_00765830; iTF_01406726; iTF_00885325; iTF_01408465; iTF_01407571; iTF_01405944;
- 80% Identity
- -