Veme011718.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- -
- Assembly
- GCA_000949405.1
- Location
- NW:776376-780774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00015 0.011 15.7 4.5 2 23 393 414 392 414 0.97 2 15 0.049 3.8 7.8 1.5 2 23 421 443 420 443 0.95 3 15 4.8e-05 0.0037 17.3 0.9 2 23 530 551 529 551 0.97 4 15 0.0001 0.008 16.2 4.0 1 23 557 579 557 580 0.93 5 15 0.015 1.1 9.4 0.3 1 23 585 607 585 607 0.97 6 15 2.9e-06 0.00022 21.1 1.3 1 23 625 647 625 647 0.98 7 15 2.2e-06 0.00017 21.5 1.5 1 23 653 675 653 675 0.97 8 15 5.3e-07 4.1e-05 23.4 1.0 1 23 681 703 681 703 0.98 9 15 0.0011 0.081 13.0 0.2 1 23 709 731 709 731 0.99 10 15 6.3e-06 0.00049 20.0 0.3 1 23 737 760 737 760 0.93 11 15 1.5e-05 0.0011 18.8 1.3 1 23 766 788 766 788 0.98 12 15 0.00032 0.025 14.6 4.7 1 23 794 816 794 816 0.98 13 15 3.9e-06 0.0003 20.7 0.3 1 23 822 845 822 845 0.97 14 15 6.6e-07 5.1e-05 23.1 1.2 1 23 851 873 851 873 0.96 15 15 7.1e-07 5.5e-05 23.0 4.8 1 23 879 901 879 901 0.99
Sequence Information
- Coding Sequence
- ATGAATGACGCGCGAGGGAATGGTAGGCGGAGCCGGCGGAGCCGCGCGTACGGAGAAACGGCGTTAGACGCGACACATGGCAGAGATAATATGAATAAAGAAATGCCGATGAGCGTCGAGTGGATGCCGCAGAACGCGTACATGCACGGTTCCCTGGATCACCTGCTGCCGGCGGACAGAGGCCAGGACTTCATCATCATaaaggaggaggcggagtTTTATCAGAGCAGCCTGAGCGCGCAGCTGCAGGTCTCGCCCAGAGAGAGCGACAGGGAGATCAAGCGACGGGGCAGCGACCCGGCCGATCAAGCGGACTCCTTAAATCAGCCGCCCCAAGCTTCGGTCGACGCTTCCGAGAAATTGTACAACAAGGGTCGCGTTGATGTAATAGAGATGCCGGTAGACCCGACGCTTAATTGCAAGTATCTTTTCGTGTACGAAGATCAGTTTTCCAAGTTCGTCGTGCTGAAGGCCCTCCGTGGCGACACGGCCAAGGAGGTCGCGGCGAGTCTGTTAGACGTGCTGGGGATCATAGGGTCGCCGCGAGTGCTGCAGAGCGGCAACGGACGTAAATTTGCTGAGCAGGTTGTGCACGAGCTACGCTCGCTGTGGCATGGTCTGTTCGTGCTGCACGGGGACGTGTCCAGGTGTGAAGTTAGCTACAGGGATTTTAAGGGCTCGCTTGAGTCCTGGGTGAGGAAAAATCCGACCAGGACCTGGTGCGAGGGGCTCAGCCACGTGCAGATCACCCACAACTCGACGTATCGCTGTGAGAACGGCAGGGTACCGTACGACGTGCTGTTCAGGCGAAACGCGTGCGACAATTTTCAAGGCGTGGAAAAGGACACGGCGGGTCTGGGGACGGAAGAGGAGTGGCTCGAGCGTTTGTCGGATAAGAAAGGCGGAGATGCGGCTGCGACGACGGAAGACGCGCAGAGCGCATCGAACAGCACCGATCAGTGCGAAAGGAAGGAGACTGCGCGGAGTCGAGACGCGTCTACGAAAGCCGACGACGTGAACGCCTTTAGTTACGTCGACGTGAAGAGCGAGCCTCTGGCGAGCAACGCAAGTACGGTGGATTCAACGTCCACGGACGATACGGACGCGAGCAACGAGTTGAGGATCGACGAGGACTCGCGACGCAACGAGTTGAAGATCGACGACGGTCGAACCCTCAGATGCAAGTACTGTCAGAAGCGGTACATGAAGATTGGGCATTTGAAGAACCACATGAGATCGCACAACGCGAAGAAGGTTCTCCGTTGTAAGCTGTGCAGCAGACTGTTTAACTTCCCGAAAGTGTACGCGAAGCACATGAAGCAGTCGCACGGGCAGGACAAGTTGGCtgacgaagagagagagattccgGTCAGTAGAAGCACGAGGAGCAGCGCCAACGCGTTAACAGCCGTGCCGAGCAAAGGAAGATCCGTGACACGCGAGACGTCCGAGCCCGAGACAACGGGCAAGGATTGCGACTCGTCGCTGGACACGAAAGAGTTCGCCGGCAGGCTCGGCAAGGCCAGGACCCAGACCGGCAGGAGGAAGTCGACCGCGGAGATTCGCGTGTCGAAGGTGCAATCTTTGAAGTGCGCGTTCTGCACGCAAACGTTCAACTTCCCGAGCGTGCTGGAGCGACACATGCGATCGCACACGAACGAACGGCCGTACTTGTGCCAGTTATGCAACAAGAGCTTCAAACAATTGGGCCACCTCAGCCAGCACGCGCTGACCCATCACGACTACCGGTCCTTCCAATGCGCGGTGTGCGGCGTCAAGCTGGAATCGTTGGAGCTGCTGAAACAACACGCGCACTCGCACAAGGACgagacggcgacgacgacgtccaAGATACGTGACGTTTATCGTCTGTTCGAGTGCGACAGCTGCAAGAAGGTGTTTACGACCAAGAGCGTGCTGGAGCGGCACATATTCACGCACACGCAGGAGCGTCAGTACGACTGCAAGGTGTGCGACAAGCGGTTCAAGCAGGCCGGCCACGTCAAGTCGCACATGCTGGTGCACACGGGCGAGCGTCCCTTCGAGTGCCCCGTGTGCTCCAAGCGCTTCAGCCTGTCCAGCTCGCTGAAGAAGCACATGTACGTGCACAATGGCGACAAGCCGTATCAGTGCGACGTGTGCGGCGCGCGTTTCCTCGAGAAGCGCAACCTCAACGGCCACCTGCTGACGCACACCAACGAGCGGCCATTCCAGTGCAAGATCTGCGGCAAGCGGTACACCCTCGCGGACACGCTGCGCCGCCACGTCAGCGCCGCGCACGAGATTGGCCGTTCGTATCAGTGCGAGATCTGCGCCAAGATGTTCAAGCAGCTGGCGCATCTGTCGGTGCACAAGAAGGTCCACAACGACGAACGGCCGTTCCAGTGTCACCTCTGTGAGAAGAACTTCAAGCACAAGAACGTGCTCAAGTCGCACCTCGCGATCCACGCCAACGTGCGGCCGTTCGAGTGCGACGTGTGCAAGGCGACATTCGCGCGGAAGACGAACCTGCAGACGCACATCTCGTCCGCGCACATGAACGAGCGCCCGTACAGCTGCACCATCTGCGGCAAGCGCTTCAAACAGAGCAGCCACCTCAACGGCCACGTGGTCGTGCACAGCAACCTCATGCCCTACAAGTGCGATTATTGCGACCGTCGGTGCAACCGACTCGACAACTTGAAGAAGCACATGCGCCTGCACACGAAGAACAAGGAGTGA
- Protein Sequence
- MNDARGNGRRSRRSRAYGETALDATHGRDNMNKEMPMSVEWMPQNAYMHGSLDHLLPADRGQDFIIIKEEAEFYQSSLSAQLQVSPRESDREIKRRGSDPADQADSLNQPPQASVDASEKLYNKGRVDVIEMPVDPTLNCKYLFVYEDQFSKFVVLKALRGDTAKEVAASLLDVLGIIGSPRVLQSGNGRKFAEQVVHELRSLWHGLFVLHGDVSRCEVSYRDFKGSLESWVRKNPTRTWCEGLSHVQITHNSTYRCENGRVPYDVLFRRNACDNFQGVEKDTAGLGTEEEWLERLSDKKGGDAAATTEDAQSASNSTDQCERKETARSRDASTKADDVNAFSYVDVKSEPLASNASTVDSTSTDDTDASNELRIDEDSRRNELKIDDGRTLRCKYCQKRYMKIGHLKNHMRSHNAKKVLRCKLCSRLFNFPKVYAKHMKQSHGQDKLADEEREIPVSRSTRSSANALTAVPSKGRSVTRETSEPETTGKDCDSSLDTKEFAGRLGKARTQTGRRKSTAEIRVSKVQSLKCAFCTQTFNFPSVLERHMRSHTNERPYLCQLCNKSFKQLGHLSQHALTHHDYRSFQCAVCGVKLESLELLKQHAHSHKDETATTTSKIRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQYDCKVCDKRFKQAGHVKSHMLVHTGERPFECPVCSKRFSLSSSLKKHMYVHNGDKPYQCDVCGARFLEKRNLNGHLLTHTNERPFQCKICGKRYTLADTLRRHVSAAHEIGRSYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFARKTNLQTHISSAHMNERPYSCTICGKRFKQSSHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -